5i26 - Revision history

OCA at 08:20, 23 August 2023

OCA — Wed, 23 Aug 2023 08:20:40 GMT

←Older revision		Revision as of 08:20, 23 August 2023
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	==Azurin T30R1, crystal form I==		==Azurin T30R1, crystal form I==
-	<StructureSection load='5i26' size='340' side='right' caption='[[5i26]], [[Resolution\|resolution]] 1.89Å' scene=''>	+	<StructureSection load='5i26' size='340' side='right'caption='[[5i26]], [[Resolution\|resolution]] 1.89Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5i26]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I26 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5I26 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5i26]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I26 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5I26 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=CU:COPPER+(II)+ION'>CU</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.888Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=R1A:3-{[(2,2,5,5-TETRAMETHYL-1-OXO-2,5-DIHYDRO-1H-PYRROLIUM-3-YL)METHYL]DISULFANYL}-D-ALANINE'>R1A</scene>~~</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=R1A:3-{[(2,2,5,5-TETRAMETHYL-1-OXO-2,5-DIHYDRO-1H-PYRROLIUM-3-YL)METHYL]DISULFANYL}-D-ALANINE'>R1A</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azu, PA4922 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5i26 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i26 OCA], [https://pdbe.org/5i26 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5i26 RCSB], [https://www.ebi.ac.uk/pdbsum/5i26 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5i26 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5i26 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i26 OCA], [~~http~~://pdbe.org/5i26 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5i26 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5i26 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5i26 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/AZUR_PSEAE AZUR_PSEAE]] Transfers electrons from cytochrome c551 to cytochrome oxidase.	+	[https://www.uniprot.org/uniprot/AZUR_PSEAE AZUR_PSEAE] Transfers electrons from cytochrome c551 to cytochrome oxidase.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 5i26" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5i26" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Azurin 3D structures\|Azurin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Hagelueken, G~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Blue copper protein~~]]	+	[[Category: Pseudomonas aeruginosa]]
-	[[Category: ~~Metal binding protein]]~~	+	[[Category: Hagelueken G]]
-	~~[[Category: Spin label~~]]	+

OCA at 13:33, 16 November 2017

OCA — Thu, 16 Nov 2017 13:33:06 GMT

←Older revision		Revision as of 13:33, 16 November 2017
Line 3:		Line 3:
	<StructureSection load='5i26' size='340' side='right' caption='[[5i26]], [[Resolution\|resolution]] 1.89Å' scene=''>		<StructureSection load='5i26' size='340' side='right' caption='[[5i26]], [[Resolution\|resolution]] 1.89Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5i26]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I26 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5I26 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5i26]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I26 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5I26 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=R1A:3-{[(2,2,5,5-TETRAMETHYL-1-OXO-2,5-DIHYDRO-1H-PYRROLIUM-3-YL)METHYL]DISULFANYL}-D-ALANINE'>R1A</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=R1A:3-{[(2,2,5,5-TETRAMETHYL-1-OXO-2,5-DIHYDRO-1H-PYRROLIUM-3-YL)METHYL]DISULFANYL}-D-ALANINE'>R1A</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5i26 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i26 OCA], [http://pdbe.org/5i26 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5i26 RCSB], [http://www.ebi.ac.uk/pdbsum/5i26 PDBsum]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">azu, PA4922 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5i26 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i26 OCA], [http://pdbe.org/5i26 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5i26 RCSB], [http://www.ebi.ac.uk/pdbsum/5i26 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5i26 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 16:52, 10 May 2016

OCA — Tue, 10 May 2016 16:52:47 GMT

←Older revision		Revision as of 16:52, 10 May 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5i26 is ~~ON HOLD~~	+	==Azurin T30R1, crystal form I==
		+	<StructureSection load='5i26' size='340' side='right' caption='[[5i26]], [[Resolution\|resolution]] 1.89Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5i26]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I26 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5I26 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=R1A:3-{[(2,2,5,5-TETRAMETHYL-1-OXO-2,5-DIHYDRO-1H-PYRROLIUM-3-YL)METHYL]DISULFANYL}-D-ALANINE'>R1A</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5i26 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i26 OCA], [http://pdbe.org/5i26 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5i26 RCSB], [http://www.ebi.ac.uk/pdbsum/5i26 PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/AZUR_PSEAE AZUR_PSEAE]] Transfers electrons from cytochrome c551 to cytochrome oxidase.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Pulsed electron-electron double resonance (PELDOR or DEER) in combination with site-directed spin labelling has emerged as an important method for measuring nanometer distance constraints that are used to obtain coarse-grained structures of biomolecules or to follow their conformational changes. Translating measured spin-spin distances between spin labels into structural information requires taking the conformational flexibility of spin label side chains into account. Here, we present an analysis of orientation selective PELDOR data recorded on six singly MTSSL-labelled azurin mutants. The analysis yielded conformational MTSSL ensembles, which are considerably narrower than those predicted using in silico spin labeling methods but match well with spin label conformations found in the corresponding crystal structures. The possible reasons and consequences for predicting spin label conformers in the fold of biomolecules are discussed.

-	~~Authors: Hagelueken~~, G.	+	Determination of nitroxide spin label conformations via PELDOR and X-ray crystallography.,Abdullin D, Hagelueken G, Schiemann O Phys Chem Chem Phys. 2016 Apr 21;18(15):10428-37. doi: 10.1039/c6cp01307d. Epub, 2016 Mar 31. PMID:27029516<ref>PMID:27029516</ref>

-	~~Description: Azurin T30R1~~, ~~crystal form I~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
		+	<div class="pdbe-citations 5i26" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Hagelueken, G]]		[[Category: Hagelueken, G]]
		+	[[Category: Blue copper protein]]
		+	[[Category: Metal binding protein]]
		+	[[Category: Spin label]]

OCA: Protected "5i26" [edit=sysop:move=sysop]

OCA — Sun, 21 Feb 2016 01:27:43 GMT

Protected "5i26" [edit=sysop:move=sysop]

←Older revision

Revision as of 01:27, 21 February 2016

OCA: New page: '''Unreleased structure''' The entry 5i26 is ON HOLD Authors: Hagelueken, G. Description: Azurin T30R1, crystal form I Category: Unreleased Structures Category: Hagelueken, G

OCA — Sun, 21 Feb 2016 01:27:41 GMT

New page: '''Unreleased structure''' The entry 5i26 is ON HOLD Authors: Hagelueken, G. Description: Azurin T30R1, crystal form I Category: Unreleased Structures Category: Hagelueken, G

New page

'''Unreleased structure'''

The entry 5i26 is ON HOLD

Authors: Hagelueken, G.

Description: Azurin T30R1, crystal form I
[[Category: Unreleased Structures]]
[[Category: Hagelueken, G]]