5iva - Revision history

OCA at 10:33, 6 September 2023

OCA — Wed, 06 Sep 2023 10:33:14 GMT

←Older revision		Revision as of 10:33, 6 September 2023
Line 3:		Line 3:
	<StructureSection load='5iva' size='340' side='right'caption='[[5iva]], [[Resolution\|resolution]] 2.99Å' scene=''>		<StructureSection load='5iva' size='340' side='right'caption='[[5iva]], [[Resolution\|resolution]] 2.99Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5iva]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885~~] and [~~http~~://en.wikipedia.org/wiki/~~Pseae Pseae~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IVA OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5IVA FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5iva]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa] and [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IVA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IVA FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=C8E:(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE'>C8E</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.988Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5iv8\|5iv8]]~~, [[~~5iv9~~\|~~5iv9~~]]</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C8E:(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE'>C8E</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~lptD, imp, ostA, PA0595 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=208964 PSEAE]), lptE, PAMH19_1038 ([http~~:~~//www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus"~~ (~~Schroeter 1872~~) ~~Trevisan 1885]~~)</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5iva FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iva OCA], [https://pdbe.org/5iva PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5iva RCSB], [https://www.ebi.ac.uk/pdbsum/5iva PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5iva ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5iva FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iva OCA], [~~http~~://pdbe.org/5iva PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5iva RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5iva PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5iva ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LPTD_PSEAE LPTD_PSEAE]] Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. [[http://www.uniprot.org/uniprot/A0A0A8RAG8_PSEAI A0A0A8RAG8_PSEAI]] Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.[HAMAP-Rule:MF_01186][SAAS:SAAS00074338]	+	[https://www.uniprot.org/uniprot/LPTD_PSEAE LPTD_PSEAE] Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Pseae~~]]	+	[[Category: Pseudomonas aeruginosa]]
-	[[Category: ~~Botos, I~~]]	+	[[Category: Pseudomonas aeruginosa PAO1]]
-	[[Category: ~~Buchanan, S K~~]]	+	[[Category: Botos I]]
-	[[Category: ~~Lipopolysaccharide]]~~	+	[[Category: Buchanan SK]]
-	~~[[Category: Lptd]]~~	+
-	~~[[Category: Lpte]]~~	+
-	~~[[Category: Transport protein]]~~	+
-	~~[[Category: Transporter~~]]	+

OCA at 07:32, 3 June 2020

OCA — Wed, 03 Jun 2020 07:32:51 GMT

←Older revision		Revision as of 07:32, 3 June 2020
Line 1:		Line 1:

	==The LPS Transporter LptDE from Pseudomonas aeruginosa, core complex==		==The LPS Transporter LptDE from Pseudomonas aeruginosa, core complex==
-	<StructureSection load='5iva' size='340' side='right' caption='[[5iva]], [[Resolution\|resolution]] 2.99Å' scene=''>	+	<StructureSection load='5iva' size='340' side='right'caption='[[5iva]], [[Resolution\|resolution]] 2.99Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5iva]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IVA OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5IVA FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5iva]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885] and [http://en.wikipedia.org/wiki/Pseae Pseae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IVA OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5IVA FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=C8E:(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE'>C8E</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C8E:(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE'>C8E</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5iv8\|5iv8]], [[5iv9\|5iv9]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5iv8\|5iv8]], [[5iv9\|5iv9]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5iva FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iva OCA], [http://pdbe.org/5iva PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5iva RCSB], [http://www.ebi.ac.uk/pdbsum/5iva PDBsum]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">lptD, imp, ostA, PA0595 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=208964 PSEAE]), lptE, PAMH19_1038 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5iva FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iva OCA], [http://pdbe.org/5iva PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5iva RCSB], [http://www.ebi.ac.uk/pdbsum/5iva PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5iva ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 23:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Pseae]]
	[[Category: Botos, I]]		[[Category: Botos, I]]
	[[Category: Buchanan, S K]]		[[Category: Buchanan, S K]]

OCA at 08:00, 1 June 2016

OCA — Wed, 01 Jun 2016 08:00:43 GMT

←Older revision		Revision as of 08:00, 1 June 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	The ~~entry~~ 5iva is ~~ON HOLD until Paper~~ Publication	+	==The LPS Transporter LptDE from Pseudomonas aeruginosa, core complex==
		+	<StructureSection load='5iva' size='340' side='right' caption='[[5iva]], [[Resolution\|resolution]] 2.99Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5iva]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IVA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5IVA FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=C8E:(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE'>C8E</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5iv8\|5iv8]], [[5iv9\|5iv9]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5iva FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iva OCA], [http://pdbe.org/5iva PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5iva RCSB], [http://www.ebi.ac.uk/pdbsum/5iva PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LPTD_PSEAE LPTD_PSEAE]] Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. [[http://www.uniprot.org/uniprot/A0A0A8RAG8_PSEAI A0A0A8RAG8_PSEAI]] Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.[HAMAP-Rule:MF_01186][SAAS:SAAS00074338]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Incorporation of lipopolysaccharide (LPS) into the outer membrane of Gram-negative bacteria is essential for viability, and is accomplished by a two-protein complex called LptDE. We solved crystal structures of the core LptDE complexes from Yersinia pestis, Klebsiella pneumoniae, Pseudomonas aeruginosa, and a full-length structure of the K. pneumoniae LptDE complex. Our structures adopt the same plug and 26-strand beta-barrel architecture found recently for the Shigella flexneri and Salmonella typhimurium LptDE structures, illustrating a conserved fold across the family. A comparison of the only two full-length structures, SfLptDE and our KpLptDE, reveals a 21 degrees rotation of the LptD N-terminal domain that may impart flexibility on the trans-envelope LptCAD scaffold. Utilizing mutagenesis coupled to an in vivo functional assay and molecular dynamics simulations, we demonstrate the critical role of Pro231 and Pro246 in the function of the LptD lateral gate that allows partitioning of LPS into the outer membrane.

-	~~Authors: Botos~~, I., Buchanan, S.K.	+	Structural and Functional Characterization of the LPS Transporter LptDE from Gram-Negative Pathogens.,Botos I, Majdalani N, Mayclin SJ, McCarthy JG, Lundquist K, Wojtowicz D, Barnard TJ, Gumbart JC, Buchanan SK Structure. 2016 May 3. pii: S0969-2126(16)30043-0. doi:, 10.1016/j.str.2016.03.026. PMID:27161977<ref>PMID:27161977</ref>

-	~~Description: The LPS Transporter LptDE from Pseudomonas aeruginosa~~, ~~core complex~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category: Unreleased Structures]]~~	+	</div>
-	~~[[Category~~: ~~Buchanan, S.K]]~~	+	<div class="pdbe-citations 5iva" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Botos, I]]		[[Category: Botos, I]]
		+	[[Category: Buchanan, S K]]
		+	[[Category: Lipopolysaccharide]]
		+	[[Category: Lptd]]
		+	[[Category: Lpte]]
		+	[[Category: Transport protein]]
		+	[[Category: Transporter]]

OCA: Protected "5iva" [edit=sysop:move=sysop]

OCA — Wed, 11 May 2016 01:01:06 GMT

Protected "5iva" [edit=sysop:move=sysop]

←Older revision

Revision as of 01:01, 11 May 2016

OCA: New page: '''Unreleased structure''' The entry 5iva is ON HOLD until Paper Publication Authors: Botos, I., Buchanan, S.K. Description: The LPS Transporter LptDE from Pseudomonas aeruginosa, core...

OCA — Wed, 11 May 2016 01:01:05 GMT

New page: '''Unreleased structure''' The entry 5iva is ON HOLD until Paper Publication Authors: Botos, I., Buchanan, S.K. Description: The LPS Transporter LptDE from Pseudomonas aeruginosa, core...

New page

'''Unreleased structure'''

The entry 5iva is ON HOLD until Paper Publication

Authors: Botos, I., Buchanan, S.K.

Description: The LPS Transporter LptDE from Pseudomonas aeruginosa, core complex
[[Category: Unreleased Structures]]
[[Category: Buchanan, S.K]]
[[Category: Botos, I]]