5j0e - Revision history

OCA at 10:40, 6 September 2023

OCA — Wed, 06 Sep 2023 10:40:58 GMT

←Older revision		Revision as of 10:40, 6 September 2023
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	<StructureSection load='5j0e' size='340' side='right'caption='[[5j0e]], [[Resolution\|resolution]] 2.81Å' scene=''>		<StructureSection load='5j0e' size='340' side='right'caption='[[5j0e]], [[Resolution\|resolution]] 2.81Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5j0e]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J0E OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5J0E FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5j0e]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J0E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5J0E FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.81Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[5f26\|5f26]]~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5j0e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j0e OCA], [~~http~~://pdbe.org/5j0e PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5j0e RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5j0e PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5j0e ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5j0e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j0e OCA], [https://pdbe.org/5j0e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5j0e RCSB], [https://www.ebi.ac.uk/pdbsum/5j0e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5j0e ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Collie, G W~~]]	+	[[Category: Synthetic construct]]
-	[[Category: ~~Huc, I~~]]	+	[[Category: Collie GW]]
-	[[Category: ~~Kauffmann, B~~]]	+	[[Category: Huc I]]
-	[[Category: ~~Mandal, P K~~]]	+	[[Category: Kauffmann B]]
-	[[Category: ~~Consensus promoter-sequence]]~~	+	[[Category: Mandal PK]]
-	~~[[Category: Dna]]~~	+
-	~~[[Category: Dna crystallography]]~~	+
-	~~[[Category: Pribnow box]]~~	+
-	~~[[Category: Racemic dna~~]]	+

OCA at 07:23, 10 June 2020

OCA — Wed, 10 Jun 2020 07:23:30 GMT

←Older revision		Revision as of 07:23, 10 June 2020
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	==Crystal structures of Pribnow box consensus promoter sequence (P32)==		==Crystal structures of Pribnow box consensus promoter sequence (P32)==
-	<StructureSection load='5j0e' size='340' side='right' caption='[[5j0e]], [[Resolution\|resolution]] 2.81Å' scene=''>	+	<StructureSection load='5j0e' size='340' side='right'caption='[[5j0e]], [[Resolution\|resolution]] 2.81Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5j0e]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J0E OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5J0E FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5j0e]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J0E OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5J0E FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5f26\|5f26]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5f26\|5f26]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5j0e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j0e OCA], [http://pdbe.org/5j0e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5j0e RCSB], [http://www.ebi.ac.uk/pdbsum/5j0e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5j0e ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5j0e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j0e OCA], [http://pdbe.org/5j0e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5j0e RCSB], [http://www.ebi.ac.uk/pdbsum/5j0e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5j0e ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Collie, G W]]		[[Category: Collie, G W]]
	[[Category: Huc, I]]		[[Category: Huc, I]]

OCA at 06:43, 26 July 2016

OCA — Tue, 26 Jul 2016 06:43:50 GMT

←Older revision		Revision as of 06:43, 26 July 2016
Line 6:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5f26\|5f26]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5f26\|5f26]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5j0e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j0e OCA], [http://pdbe.org/5j0e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5j0e RCSB], [http://www.ebi.ac.uk/pdbsum/5j0e PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5j0e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j0e OCA], [http://pdbe.org/5j0e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5j0e RCSB], [http://www.ebi.ac.uk/pdbsum/5j0e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5j0e ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 15:57, 1 June 2016

OCA — Wed, 01 Jun 2016 15:57:05 GMT

←Older revision		Revision as of 15:57, 1 June 2016
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-	'''Unreleased structure'''

-	~~The entry~~ 5j0e is ~~ON HOLD until Paper~~ Publication	+	==Crystal structures of Pribnow box consensus promoter sequence (P32)==
		+	<StructureSection load='5j0e' size='340' side='right' caption='[[5j0e]], [[Resolution\|resolution]] 2.81Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5j0e]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J0E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5J0E FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5f26\|5f26]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5j0e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j0e OCA], [http://pdbe.org/5j0e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5j0e RCSB], [http://www.ebi.ac.uk/pdbsum/5j0e PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	It has previously been shown that the use of racemic mixtures of naturally chiral macromolecules such as protein and DNA can significantly aid the crystallogenesis process, thereby addressing one of the major bottlenecks to structure determination by X-ray crystallographic methods-that of crystal growth. Although previous studies have provided convincing evidence of the applicability of the racemic crystallization technique to DNA through the study of well-characterized DNA structures, we sought to apply this method to a historically challenging DNA sequence. For this purpose we chose a non-self-complementary DNA duplex containing the biologically-relevant Pribnow box consensus sequence 'TATAAT'. Four racemic crystal structures of this previously un-crystallizable DNA target are reported (with resolutions in the range of 1.65-2.3 A), with further crystallographic studies and structural analysis providing insight into the racemic crystallization process as well as structural details of this highly pertinent DNA sequence.

-	~~Authors~~:	+	Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.,Mandal PK, Collie GW, Srivastava SC, Kauffmann B, Huc I Nucleic Acids Res. 2016 May 2. pii: gkw367. PMID:27137886<ref>PMID:27137886</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5j0e" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Collie, G W]]
		+	[[Category: Huc, I]]
		+	[[Category: Kauffmann, B]]
		+	[[Category: Mandal, P K]]
		+	[[Category: Consensus promoter-sequence]]
		+	[[Category: Dna]]
		+	[[Category: Dna crystallography]]
		+	[[Category: Pribnow box]]
		+	[[Category: Racemic dna]]

OCA at 14:56, 15 May 2016

OCA — Sun, 15 May 2016 14:56:00 GMT

←Older revision		Revision as of 14:56, 15 May 2016
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	The entry 5j0e is ON HOLD until Paper Publication		The entry 5j0e is ON HOLD until Paper Publication

-	Authors: ~~Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.~~	+	Authors:

	Description:		Description:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Collie, G.W]]
-	[[Category: Mandal, P.K]]
-	[[Category: Kauffmann, B]]
-	[[Category: Huc, I]]

OCA: Protected "5j0e" [edit=sysop:move=sysop]

OCA — Wed, 11 May 2016 01:15:23 GMT

Protected "5j0e" [edit=sysop:move=sysop]

←Older revision

Revision as of 01:15, 11 May 2016

OCA: New page: '''Unreleased structure''' The entry 5j0e is ON HOLD until Paper Publication Authors: Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I. Description: [[Category: Unreleased Structures...

OCA — Wed, 11 May 2016 01:15:22 GMT

New page: '''Unreleased structure''' The entry 5j0e is ON HOLD until Paper Publication Authors: Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I. Description: [[Category: Unreleased Structures...

New page

'''Unreleased structure'''

The entry 5j0e is ON HOLD until Paper Publication

Authors: Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.

Description:
[[Category: Unreleased Structures]]
[[Category: Collie, G.W]]
[[Category: Mandal, P.K]]
[[Category: Kauffmann, B]]
[[Category: Huc, I]]