5jcv - Revision history

OCA at 10:59, 6 September 2023

OCA — Wed, 06 Sep 2023 10:59:11 GMT

←Older revision		Revision as of 10:59, 6 September 2023
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	<StructureSection load='5jcv' size='340' side='right'caption='[[5jcv]], [[Resolution\|resolution]] 2.23Å' scene=''>		<StructureSection load='5jcv' size='340' side='right'caption='[[5jcv]], [[Resolution\|resolution]] 2.23Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jcv]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Lismo Lismo~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JCV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5JCV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jcv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes_EGD-e Listeria monocytogenes EGD-e]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JCV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JCV FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=CL:CHLORIDE+ION'>CL</scene~~>, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.23Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<~~tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">lmo2181 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=169963 LISMO])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jcv OCA], [https://pdbe.org/5jcv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jcv RCSB], [https://www.ebi.ac.uk/pdbsum/5jcv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jcv ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5jcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jcv OCA], [~~http~~://pdbe.org/5jcv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5jcv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5jcv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5jcv ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/SRTB_LISMO SRTB_LISMO] Transpeptidase that anchors surface proteins to the cell wall (Probable) (PubMed:16247833, PubMed:19129190). Recognizes and modifies its substrate by proteolytic cleavage of a C-terminal sorting signal. Following cleavage, a covalent intermediate is formed via a thioester bond between the sortase and its substrate, which is then transferred and covalently attached to the cell wall (Probable). Catalyzes a cell wall sorting reaction in which a surface protein with the consensus sorting signal NP(Q/K)(T/S)(N/G/S)(D/A) is cleaved between the fourth and fifth residues, and the fourth position is linked to the cell wall (Probable) (PubMed:19129190). This is not the major sortase in Listeria, it seems to anchor only 2 proteins, Hbp2 (SvpA) and Hbp1 (PubMed:15028680, PubMed:16247833).<ref>PMID:15028680</ref> <ref>PMID:16247833</ref> <ref>PMID:19129190</ref> <ref>PMID:15028680</ref> <ref>PMID:16247833</ref>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Lismo~~]]	+	[[Category: Listeria monocytogenes EGD-e]]
-	[[Category: Anderson~~, W F]]~~	+	[[Category: Anderson WF]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Grimshaw S]]
-	[[Category: Grimshaw, S]]	+	[[Category: Joachimiak A]]
-	[[Category: Joachimiak, A]]	+	[[Category: Osipiuk J]]
-	[[Category: Osipiuk, J]]	+	[[Category: Zhou M]]
-	[[Category: Zhou, M]]	+
-	~~[[Category: Csgid]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Sortase~~]]	+

OCA at 16:22, 11 December 2019

OCA — Wed, 11 Dec 2019 16:22:08 GMT

←Older revision		Revision as of 16:22, 11 December 2019
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	==Sortase B from Listeria monocytogenes.==		==Sortase B from Listeria monocytogenes.==
-	<StructureSection load='5jcv' size='340' side='right' caption='[[5jcv]], [[Resolution\|resolution]] 2.23Å' scene=''>	+	<StructureSection load='5jcv' size='340' side='right'caption='[[5jcv]], [[Resolution\|resolution]] 2.23Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5jcv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lismo Lismo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JCV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JCV FirstGlance]. <br>		<table><tr><td colspan='2'>[[5jcv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lismo Lismo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JCV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JCV FirstGlance]. <br>
Line 11:		Line 11:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Lismo]]		[[Category: Lismo]]
	[[Category: Anderson, W F]]		[[Category: Anderson, W F]]

OCA at 17:53, 15 November 2017

OCA — Wed, 15 Nov 2017 17:53:51 GMT

←Older revision		Revision as of 17:53, 15 November 2017
Line 3:		Line 3:
	<StructureSection load='5jcv' size='340' side='right' caption='[[5jcv]], [[Resolution\|resolution]] 2.23Å' scene=''>		<StructureSection load='5jcv' size='340' side='right' caption='[[5jcv]], [[Resolution\|resolution]] 2.23Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jcv]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JCV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JCV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jcv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lismo Lismo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JCV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JCV FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jcv OCA], [http://pdbe.org/5jcv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jcv RCSB], [http://www.ebi.ac.uk/pdbsum/5jcv PDBsum]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">lmo2181 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=169963 LISMO])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jcv OCA], [http://pdbe.org/5jcv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jcv RCSB], [http://www.ebi.ac.uk/pdbsum/5jcv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jcv ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Lismo]]
	[[Category: Anderson, W F]]		[[Category: Anderson, W F]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA: Protected "5jcv" [edit=sysop:move=sysop]

OCA — Fri, 13 May 2016 12:10:57 GMT

Protected "5jcv" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:10, 13 May 2016

OCA: New page: ==Sortase B from Listeria monocytogenes.== == Structural highligh...

OCA — Fri, 13 May 2016 12:10:49 GMT

New page: ==Sortase B from Listeria monocytogenes.== <StructureSection load='5jcv' size='340' side='right' caption='5jcv, resolution 2.23Å' scene=''> == Structural highligh...

New page

==Sortase B from Listeria monocytogenes.==
<StructureSection load='5jcv' size='340' side='right' caption='[[5jcv]], [[Resolution|resolution]] 2.23Å' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5jcv]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JCV OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JCV FirstGlance]. 
</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl">[[Non-Standard_Residue|NonStd Res:]]</td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jcv OCA], [http://pdbe.org/5jcv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jcv RCSB], [http://www.ebi.ac.uk/pdbsum/5jcv PDBsum]</td></tr>
</table>
__TOC__
</StructureSection>
[[Category: Anderson, W F]]
[[Category: Structural genomic]]
[[Category: Grimshaw, S]]
[[Category: Joachimiak, A]]
[[Category: Osipiuk, J]]
[[Category: Zhou, M]]
[[Category: Csgid]]
[[Category: Hydrolase]]
[[Category: Sortase]]