5jfg - Revision history

OCA at 07:24, 1 May 2024

OCA — Wed, 01 May 2024 07:24:17 GMT

←Older revision		Revision as of 07:24, 1 May 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5jfg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JFG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JFG FirstGlance]. <br>		<table><tr><td colspan='2'>[[5jfg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JFG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JFG FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.77Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jfg OCA], [https://pdbe.org/5jfg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jfg RCSB], [https://www.ebi.ac.uk/pdbsum/5jfg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jfg ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jfg OCA], [https://pdbe.org/5jfg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jfg RCSB], [https://www.ebi.ac.uk/pdbsum/5jfg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jfg ProSAT]</span></td></tr>
	</table>		</table>

OCA at 09:56, 15 March 2023

OCA — Wed, 15 Mar 2023 09:56:41 GMT

←Older revision		Revision as of 09:56, 15 March 2023
Line 3:		Line 3:
	<StructureSection load='5jfg' size='340' side='right'caption='[[5jfg]], [[Resolution\|resolution]] 1.77Å' scene=''>		<StructureSection load='5jfg' size='340' side='right'caption='[[5jfg]], [[Resolution\|resolution]] 1.77Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jfg]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_43587 Atcc 43587~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JFG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5JFG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jfg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JFG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JFG FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:~~CALCIUM~~+~~ION~~'>CA</scene>, <scene name='pdbligand=~~DMS~~:~~DIMETHYL~~+~~SULFOXIDE~~'>~~DMS~~</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~ACY~~:~~ACETIC~~+~~ACID~~'>~~ACY~~</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>~~</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jfg OCA], [https://pdbe.org/5jfg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jfg RCSB], [https://www.ebi.ac.uk/pdbsum/5jfg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jfg ProSAT]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">radA, PF1926 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 ATCC 43587])~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5jfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jfg OCA], [~~http~~://pdbe.org/5jfg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5jfg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5jfg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5jfg ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/RADA_PYRFU RADA_PYRFU]] Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.	+	[https://www.uniprot.org/uniprot/RADA_PYRFU RADA_PYRFU] Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.

	==See Also==		==See Also==
Line 16:		Line 14:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 43587]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Abell, C]]	+	[[Category: Pyrococcus furiosus]]
-	[[Category: Blundell~~, T L~~]]	+	[[Category: Synthetic construct]]
-	[[Category: Fischer, G]]	+	[[Category: Abell C]]
-	[[Category: Hyvonen, M]]	+	[[Category: Blundell TL]]
-	[[Category: Marsh, M]]	+	[[Category: Fischer G]]
-	[[Category: Morgan, M]]	+	[[Category: Hyvonen M]]
-	[[Category: Moschetti, T]]	+	[[Category: Marsh M]]
-	[[Category: Ng, H]]	+	[[Category: Morgan M]]
-	[[Category: Scott, D]]	+	[[Category: Moschetti T]]
-	[[Category: Sharpe, T]]	+	[[Category: Ng H]]
-	[[Category: Skidmore, J]]	+	[[Category: Scott D]]
-	[[Category: Venkitaraman, A]]	+	[[Category: Sharpe T]]
-	~~[[Category: Dna repair]]~~	+	[[Category: Skidmore J]]
-	~~[[Category: Fragment based drug design]]~~	+	[[Category: Venkitaraman A]]
-	~~[[Category: Humanisation]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 07:46, 10 June 2020

OCA — Wed, 10 Jun 2020 07:46:33 GMT

←Older revision		Revision as of 07:46, 10 June 2020
Line 1:		Line 1:

	==Structure of humanised RadA-mutant humRadA22F in complex with peptide FHTA==		==Structure of humanised RadA-mutant humRadA22F in complex with peptide FHTA==
-	<StructureSection load='5jfg' size='340' side='right' caption='[[5jfg]], [[Resolution\|resolution]] 1.77Å' scene=''>	+	<StructureSection load='5jfg' size='340' side='right'caption='[[5jfg]], [[Resolution\|resolution]] 1.77Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JFG OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5JFG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jfg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JFG OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5JFG FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5jfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jfg OCA], [http://pdbe.org/5jfg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jfg RCSB], [http://www.ebi.ac.uk/pdbsum/5jfg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jfg ProSAT]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">radA, PF1926 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2261 ATCC 43587])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5jfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jfg OCA], [http://pdbe.org/5jfg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jfg RCSB], [http://www.ebi.ac.uk/pdbsum/5jfg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jfg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/RADA_PYRFU RADA_PYRFU]] Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.		[[http://www.uniprot.org/uniprot/RADA_PYRFU RADA_PYRFU]] Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.
		+
		+	==See Also==
		+	*[[Resolvase 3D structures\|Resolvase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 43587]]
		+	[[Category: Large Structures]]
	[[Category: Abell, C]]		[[Category: Abell, C]]
	[[Category: Blundell, T L]]		[[Category: Blundell, T L]]

OCA at 18:46, 26 October 2016

OCA — Wed, 26 Oct 2016 18:46:20 GMT

←Older revision		Revision as of 18:46, 26 October 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5jfg is ~~ON HOLD~~	+	==Structure of humanised RadA-mutant humRadA22F in complex with peptide FHTA==
-		+	<StructureSection load='5jfg' size='340' side='right' caption='[[5jfg]], [[Resolution\|resolution]] 1.77Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5jfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JFG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JFG FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jfg OCA], [http://pdbe.org/5jfg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jfg RCSB], [http://www.ebi.ac.uk/pdbsum/5jfg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jfg ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RADA_PYRFU RADA_PYRFU]] Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Abell, C]]
		+	[[Category: Blundell, T L]]
		+	[[Category: Fischer, G]]
		+	[[Category: Hyvonen, M]]
		+	[[Category: Marsh, M]]
		+	[[Category: Morgan, M]]
		+	[[Category: Moschetti, T]]
		+	[[Category: Ng, H]]
		+	[[Category: Scott, D]]
		+	[[Category: Sharpe, T]]
		+	[[Category: Skidmore, J]]
		+	[[Category: Venkitaraman, A]]
		+	[[Category: Dna repair]]
		+	[[Category: Fragment based drug design]]
		+	[[Category: Humanisation]]
		+	[[Category: Hydrolase]]

OCA at 23:17, 12 July 2016

OCA — Tue, 12 Jul 2016 23:17:53 GMT

←Older revision		Revision as of 23:17, 12 July 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5jfg is ON HOLD ~~until sometime in the future~~	+	The entry 5jfg is ON HOLD

	Authors:		Authors:

OCA at 15:21, 15 May 2016

OCA — Sun, 15 May 2016 15:21:38 GMT

←Older revision		Revision as of 15:21, 15 May 2016
Line 3:		Line 3:
	The entry 5jfg is ON HOLD until sometime in the future		The entry 5jfg is ON HOLD until sometime in the future

-	Authors: ~~Fischer, G., Marsh, M., Moschetti, T., Sharpe, T., Scott, D., Morgan, M., Ng, H., Skidmore, J., Venkitaraman, A., Abell, C., Blundell, T.L., Hyvonen, M.~~	+	Authors:

	Description:		Description:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Ng, H]]
-	[[Category: Hyvonen, M]]
-	[[Category: Abell, C]]
-	[[Category: Morgan, M]]
-	[[Category: Skidmore, J]]
-	[[Category: Blundell, T.L]]
-	[[Category: Fischer, G]]
-	[[Category: Marsh, M]]
-	[[Category: Scott, D]]
-	[[Category: Venkitaraman, A]]
-	[[Category: Moschetti, T]]
-	[[Category: Sharpe, T]]

OCA: Protected "5jfg" [edit=sysop:move=sysop]

OCA — Wed, 11 May 2016 01:58:12 GMT

Protected "5jfg" [edit=sysop:move=sysop]

←Older revision

Revision as of 01:58, 11 May 2016

OCA: New page: '''Unreleased structure''' The entry 5jfg is ON HOLD until sometime in the future Authors: Fischer, G., Marsh, M., Moschetti, T., Sharpe, T., Scott, D., Morgan, M., Ng, H., Skidmore, J....

OCA — Wed, 11 May 2016 01:58:11 GMT

New page: '''Unreleased structure''' The entry 5jfg is ON HOLD until sometime in the future Authors: Fischer, G., Marsh, M., Moschetti, T., Sharpe, T., Scott, D., Morgan, M., Ng, H., Skidmore, J....

New page

'''Unreleased structure'''

The entry 5jfg is ON HOLD until sometime in the future

Authors: Fischer, G., Marsh, M., Moschetti, T., Sharpe, T., Scott, D., Morgan, M., Ng, H., Skidmore, J., Venkitaraman, A., Abell, C., Blundell, T.L., Hyvonen, M.

Description:
[[Category: Unreleased Structures]]
[[Category: Ng, H]]
[[Category: Hyvonen, M]]
[[Category: Abell, C]]
[[Category: Morgan, M]]
[[Category: Skidmore, J]]
[[Category: Blundell, T.L]]
[[Category: Fischer, G]]
[[Category: Marsh, M]]
[[Category: Scott, D]]
[[Category: Venkitaraman, A]]
[[Category: Moschetti, T]]
[[Category: Sharpe, T]]