5jfi - Revision history

OCA at 11:02, 6 September 2023

OCA — Wed, 06 Sep 2023 11:02:15 GMT

←Older revision		Revision as of 11:02, 6 September 2023
Line 3:		Line 3:
	<StructureSection load='5jfi' size='340' side='right'caption='[[5jfi]], [[Resolution\|resolution]] 2.75Å' scene=''>		<StructureSection load='5jfi' size='340' side='right'caption='[[5jfi]], [[Resolution\|resolution]] 2.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jfi]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Arath Arath~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JFI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5JFI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jfi]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JFI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JFI FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=NAG:N~~-~~ACETYL-D-GLUCOSAMINE'>NAG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.749Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene>~~</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5jfk\|5jfk]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jfi OCA], [https://pdbe.org/5jfi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jfi RCSB], [https://www.ebi.ac.uk/pdbsum/5jfi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jfi ProSAT]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TDR~~, ~~PXY, At5g61480, MCI2.4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])~~<~~/td></tr>~~	+
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Non~~-~~specific_serine/threonine_protein_kinase Non~~-~~specific serine/threonine protein kinase], with EC number [http://www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1]~~ </~~span~~></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5jfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jfi OCA], [~~http~~://pdbe.org/5jfi PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5jfi RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5jfi PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5jfi ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/TDR_ARATH TDR_ARATH]] Acts with CLE41p and CLE44p peptides as a ligand-receptor pair in a signal transduction pathway involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Mediates repression of tracheary element differentiation and the promotion of procambial cells formation and polar division adjacent to phloem cells in the veins.<ref>PMID:17570668</ref> <ref>PMID:18812507</ref>	+	[https://www.uniprot.org/uniprot/TDR_ARATH TDR_ARATH] Acts with CLE41p and CLE44p peptides as a ligand-receptor pair in a signal transduction pathway involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Mediates repression of tracheary element differentiation and the promotion of procambial cells formation and polar division adjacent to phloem cells in the veins.<ref>PMID:17570668</ref> <ref>PMID:18812507</ref>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arath~~]]	+	[[Category: Arabidopsis thaliana]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Non-specific serine/threonine protein kinase]]~~	+	[[Category: Li Z]]
-	[[Category: Li, Z]]	+	[[Category: Xu G]]
-	[[Category: Xu, G]]	+
-	~~[[Category: Glycosylation]]~~	+
-	~~[[Category: Hydroxylation]]~~	+
-	~~[[Category: Lrr]]~~	+
-	~~[[Category: Signaling protein]]~~	+
-	~~[[Category: Tdif peptide]]~~	+
-	~~[[Category: Tdr receptor extracellular domain~~]]	+

OCA at 07:46, 10 June 2020

OCA — Wed, 10 Jun 2020 07:46:36 GMT

←Older revision		Revision as of 07:46, 10 June 2020
Line 1:		Line 1:

	==Crystal structure of a TDIF-TDR complex==		==Crystal structure of a TDIF-TDR complex==
-	<StructureSection load='5jfi' size='340' side='right' caption='[[5jfi]], [[Resolution\|resolution]] 2.75Å' scene=''>	+	<StructureSection load='5jfi' size='340' side='right'caption='[[5jfi]], [[Resolution\|resolution]] 2.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jfi]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JFI OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5JFI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jfi]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JFI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5JFI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5jfk\|5jfk]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5jfk\|5jfk]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TDR, PXY, At5g61480, MCI2.4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5jfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jfi OCA], [http://pdbe.org/5jfi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jfi RCSB], [http://www.ebi.ac.uk/pdbsum/5jfi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jfi ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5jfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jfi OCA], [http://pdbe.org/5jfi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jfi RCSB], [http://www.ebi.ac.uk/pdbsum/5jfi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jfi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 16:		Line 17:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Arath]]
		+	[[Category: Large Structures]]
	[[Category: Non-specific serine/threonine protein kinase]]		[[Category: Non-specific serine/threonine protein kinase]]
	[[Category: Li, Z]]		[[Category: Li, Z]]

OCA at 13:45, 29 March 2017

OCA — Wed, 29 Mar 2017 13:45:21 GMT

←Older revision		Revision as of 13:45, 29 March 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5jfi is ~~ON HOLD~~ ~~until Paper Publication~~	+	==Crystal structure of a TDIF-TDR complex==
-		+	<StructureSection load='5jfi' size='340' side='right' caption='[[5jfi]], [[Resolution\|resolution]] 2.75Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5jfi]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JFI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JFI FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5jfk\|5jfk]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Non-specific_serine/threonine_protein_kinase Non-specific serine/threonine protein kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.1 2.7.11.1] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jfi OCA], [http://pdbe.org/5jfi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jfi RCSB], [http://www.ebi.ac.uk/pdbsum/5jfi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jfi ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/TDR_ARATH TDR_ARATH]] Acts with CLE41p and CLE44p peptides as a ligand-receptor pair in a signal transduction pathway involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Mediates repression of tracheary element differentiation and the promotion of procambial cells formation and polar division adjacent to phloem cells in the veins.<ref>PMID:17570668</ref> <ref>PMID:18812507</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Non-specific serine/threonine protein kinase]]
		+	[[Category: Li, Z]]
		+	[[Category: Xu, G]]
		+	[[Category: Glycosylation]]
		+	[[Category: Hydroxylation]]
		+	[[Category: Lrr]]
		+	[[Category: Signaling protein]]
		+	[[Category: Tdif peptide]]
		+	[[Category: Tdr receptor extracellular domain]]

OCA at 14:47, 9 December 2016

OCA — Fri, 09 Dec 2016 14:47:15 GMT

←Older revision		Revision as of 14:47, 9 December 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5jfi is ON HOLD	+	The entry 5jfi is ON HOLD until Paper Publication

	Authors:		Authors:

OCA at 15:21, 15 May 2016

OCA — Sun, 15 May 2016 15:21:44 GMT

←Older revision		Revision as of 15:21, 15 May 2016
Line 3:		Line 3:
	The entry 5jfi is ON HOLD		The entry 5jfi is ON HOLD

-	Authors: ~~Xu, G., Li, Z.~~	+	Authors:

	Description:		Description:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Li, Z]]
-	[[Category: Xu, G]]

OCA: Protected "5jfi" [edit=sysop:move=sysop]

OCA — Wed, 11 May 2016 01:58:18 GMT

Protected "5jfi" [edit=sysop:move=sysop]

←Older revision

Revision as of 01:58, 11 May 2016

OCA: New page: '''Unreleased structure''' The entry 5jfi is ON HOLD Authors: Xu, G., Li, Z. Description: Category: Unreleased Structures Category: Li, Z Category: Xu, G

OCA — Wed, 11 May 2016 01:58:17 GMT

New page: '''Unreleased structure''' The entry 5jfi is ON HOLD Authors: Xu, G., Li, Z. Description: Category: Unreleased Structures Category: Li, Z Category: Xu, G

New page

'''Unreleased structure'''

The entry 5jfi is ON HOLD

Authors: Xu, G., Li, Z.

Description:
[[Category: Unreleased Structures]]
[[Category: Li, Z]]
[[Category: Xu, G]]