5jj8 - Revision history

OCA at 18:54, 20 September 2023

OCA — Wed, 20 Sep 2023 18:54:38 GMT

←Older revision		Revision as of 18:54, 20 September 2023
Line 3:		Line 3:
	<StructureSection load='5jj8' size='340' side='right'caption='[[5jj8]], [[Resolution\|resolution]] 2.58Å' scene=''>		<StructureSection load='5jj8' size='340' side='right'caption='[[5jj8]], [[Resolution\|resolution]] 2.58Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jj8]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JJ8 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5JJ8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jj8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JJ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JJ8 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=ZN:ZINC+ION'>ZN</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.585Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">can_1, can, yadF, AO943_21535, AO946_10560, AOD73_25440, AOU28_24465, AOY09_00950, APT60_24635, ATC05_14980, AU380_02155, ERS445055_04974, HV95_21180, HV96_01220, HV97_23895, HV98_01810, HV99_02890, HW00_06825, HW01_20790, HW02_08065, HW03_11820, HW04_25045, HW05_22660, HW06_00905, HW07_08265, HW08_30020, HW09_16360, HW10_17975, IOMTU133_5488, PA257_5879, PA8380_53220, PAERUG_E15_London_28_01_14_01862, PAERUG_P32_London_17_VIM_2_10_11_05532, PAO1OR4768 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~287~~ "~~Bacillus aeruginosus~~" ~~(Schroeter 1872) Trevisan 1885])</td~~><~~/tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[http://en.wikipedia.org/wiki/Carbonate_dehydratase Carbonate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.1 4.2.1.1]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jj8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jj8 OCA], [https://pdbe.org/5jj8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jj8 RCSB], [https://www.ebi.ac.uk/pdbsum/5jj8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jj8 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5jj8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jj8 OCA], [~~http~~://pdbe.org/5jj8 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5jj8 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5jj8 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5jj8 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~A0A072ZBL6_PSEAI A0A072ZBL6_PSEAI]] Reversible hydration of carbon dioxide.[RuleBase:RU003956~~]	+	[https://www.uniprot.org/uniprot/Q9HVB9_PSEAE Q9HVB9_PSEAE]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Carbonate dehydratase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Agbandje-McKenna, M]]	+	[[Category: Pseudomonas aeruginosa]]
-	[[Category: Aggarwal, M]]	+	[[Category: Agbandje-McKenna M]]
-	[[Category: Kurian~~, J J~~]]	+	[[Category: Aggarwal M]]
-	[[Category: McKenna, R]]	+	[[Category: Kurian JJ]]
-	[[Category: Pinard~~, M A]]~~	+	[[Category: McKenna R]]
-	~~[[Category: Beta-carbonic anhydrase]]~~	+	[[Category: Pinard MA]]
-	~~[[Category: Crystal packing]]~~	+
-	~~[[Category: Lyase]]~~	+
-	~~[[Category: Psca3~~]]	+

OCA at 12:02, 25 December 2019

OCA — Wed, 25 Dec 2019 12:02:17 GMT

←Older revision		Revision as of 12:02, 25 December 2019
Line 1:		Line 1:

	==Crystal Structure of the Beta Carbonic Anhydrase psCA3 isolated from Pseudomonas aeruginosa - alternate crystal packing form==		==Crystal Structure of the Beta Carbonic Anhydrase psCA3 isolated from Pseudomonas aeruginosa - alternate crystal packing form==
-	<StructureSection load='5jj8' size='340' side='right' caption='[[5jj8]], [[Resolution\|resolution]] 2.58Å' scene=''>	+	<StructureSection load='5jj8' size='340' side='right'caption='[[5jj8]], [[Resolution\|resolution]] 2.58Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5jj8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JJ8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JJ8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[5jj8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JJ8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JJ8 FirstGlance]. <br>
Line 20:		Line 20:
	</div>		</div>
	<div class="pdbe-citations 5jj8" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5jj8" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Carbonic anhydrase 3D structures\|Carbonic anhydrase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 25:		Line 28:
	</StructureSection>		</StructureSection>
	[[Category: Carbonate dehydratase]]		[[Category: Carbonate dehydratase]]
		+	[[Category: Large Structures]]
	[[Category: Agbandje-McKenna, M]]		[[Category: Agbandje-McKenna, M]]
	[[Category: Aggarwal, M]]		[[Category: Aggarwal, M]]

OCA at 12:54, 6 November 2017

OCA — Mon, 06 Nov 2017 12:54:57 GMT

←Older revision		Revision as of 12:54, 6 November 2017
Line 3:		Line 3:
	<StructureSection load='5jj8' size='340' side='right' caption='[[5jj8]], [[Resolution\|resolution]] 2.58Å' scene=''>		<StructureSection load='5jj8' size='340' side='right' caption='[[5jj8]], [[Resolution\|resolution]] 2.58Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jj8]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JJ8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JJ8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jj8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JJ8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JJ8 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">can_1, can, yadF, AO943_21535, AO946_10560, AOD73_25440, AOU28_24465, AOY09_00950, APT60_24635, ATC05_14980, AU380_02155, ERS445055_04974, HV95_21180, HV96_01220, HV97_23895, HV98_01810, HV99_02890, HW00_06825, HW01_20790, HW02_08065, HW03_11820, HW04_25045, HW05_22660, HW06_00905, HW07_08265, HW08_30020, HW09_16360, HW10_17975, IOMTU133_5488, PA257_5879, PA8380_53220, PAERUG_E15_London_28_01_14_01862, PAERUG_P32_London_17_VIM_2_10_11_05532, PAO1OR4768 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Carbonate_dehydratase Carbonate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.1 4.2.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Carbonate_dehydratase Carbonate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.1 4.2.1.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jj8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jj8 OCA], [http://pdbe.org/5jj8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jj8 RCSB], [http://www.ebi.ac.uk/pdbsum/5jj8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jj8 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jj8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jj8 OCA], [http://pdbe.org/5jj8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jj8 RCSB], [http://www.ebi.ac.uk/pdbsum/5jj8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jj8 ProSAT]</span></td></tr>

OCA at 06:43, 26 July 2016

OCA — Tue, 26 Jul 2016 06:43:27 GMT

←Older revision		Revision as of 06:43, 26 July 2016
Line 10:		Line 10:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/A0A072ZBL6_PSEAI A0A072ZBL6_PSEAI]] Reversible hydration of carbon dioxide.[RuleBase:RU003956]		[[http://www.uniprot.org/uniprot/A0A072ZBL6_PSEAI A0A072ZBL6_PSEAI]] Reversible hydration of carbon dioxide.[RuleBase:RU003956]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Cryoannealing has been demonstrated to improve the diffraction quality and resolution of crystals of the beta-carbonic anhydrase psCA3 concomitant with a change in space group. After initial flash-cooling in a liquid-nitrogen cryostream an X-ray diffraction data set from a psCA3 crystal was indexed in space group P21212 and was scaled to 2.6 A resolution, but subsequent cryoannealing studies revealed induced protein rearrangements in the crystal contacts, which transformed the space group to I222, with a corresponding improvement of 0.7 A in resolution. Although the change in diffraction resolution was significant, only minor changes in the psCA3 structure, which retained its catalytic `open' conformation, were observed. These findings demonstrate that cryoannealing can be successfully utilized to induce higher diffraction-quality crystals while maintaining enzymatically relevant conformations and may be useful as an experimental tool for structural studies of other enzymes where the initial diffraction quality is poor.
		+
		+	Cryoannealing-induced space-group transition of crystals of the carbonic anhydrase psCA3.,Pinard MA, Kurian JJ, Aggarwal M, Agbandje-McKenna M, McKenna R Acta Crystallogr F Struct Biol Commun. 2016 Jul 1;72(Pt 7):573-7. doi:, 10.1107/S2053230X16009286. Epub 2016 Jun 28. PMID:27380376<ref>PMID:27380376</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5jj8" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 18:02, 13 July 2016

OCA — Wed, 13 Jul 2016 18:02:51 GMT

←Older revision		Revision as of 18:02, 13 July 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5jj8 is ~~ON HOLD until Paper Publication~~	+	==Crystal Structure of the Beta Carbonic Anhydrase psCA3 isolated from Pseudomonas aeruginosa - alternate crystal packing form==
-		+	<StructureSection load='5jj8' size='340' side='right' caption='[[5jj8]], [[Resolution\|resolution]] 2.58Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5jj8]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JJ8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JJ8 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Carbonate_dehydratase Carbonate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.1 4.2.1.1] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jj8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jj8 OCA], [http://pdbe.org/5jj8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jj8 RCSB], [http://www.ebi.ac.uk/pdbsum/5jj8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jj8 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/A0A072ZBL6_PSEAI A0A072ZBL6_PSEAI]] Reversible hydration of carbon dioxide.[RuleBase:RU003956]
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Carbonate dehydratase]]
		+	[[Category: Agbandje-McKenna, M]]
		+	[[Category: Aggarwal, M]]
		+	[[Category: Kurian, J J]]
		+	[[Category: McKenna, R]]
		+	[[Category: Pinard, M A]]
		+	[[Category: Beta-carbonic anhydrase]]
		+	[[Category: Crystal packing]]
		+	[[Category: Lyase]]
		+	[[Category: Psca3]]

OCA at 15:28, 15 May 2016

OCA — Sun, 15 May 2016 15:28:31 GMT

←Older revision		Revision as of 15:28, 15 May 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5jj8 is ON HOLD	+	The entry 5jj8 is ON HOLD until Paper Publication

-	Authors: ~~Pinard, M.A., Kurian, J.J., Aggarwal, M., Agbandje-McKenna, M., McKenna, R.~~	+	Authors:

	Description:		Description:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Pinard, M.A]]
-	[[Category: Aggarwal, M]]
-	[[Category: Agbandje-Mckenna, M]]
-	[[Category: Kurian, J.J]]
-	[[Category: Mckenna, R]]

OCA: Protected "5jj8" [edit=sysop:move=sysop]

OCA — Wed, 11 May 2016 02:09:27 GMT

Protected "5jj8" [edit=sysop:move=sysop]

←Older revision

Revision as of 02:09, 11 May 2016

OCA: New page: '''Unreleased structure''' The entry 5jj8 is ON HOLD Authors: Pinard, M.A., Kurian, J.J., Aggarwal, M., Agbandje-McKenna, M., McKenna, R. Description: [[Category: Unreleased Structure...

OCA — Wed, 11 May 2016 02:09:26 GMT

New page: '''Unreleased structure''' The entry 5jj8 is ON HOLD Authors: Pinard, M.A., Kurian, J.J., Aggarwal, M., Agbandje-McKenna, M., McKenna, R. Description: [[Category: Unreleased Structure...

New page

'''Unreleased structure'''

The entry 5jj8 is ON HOLD

Authors: Pinard, M.A., Kurian, J.J., Aggarwal, M., Agbandje-McKenna, M., McKenna, R.

Description:
[[Category: Unreleased Structures]]
[[Category: Pinard, M.A]]
[[Category: Aggarwal, M]]
[[Category: Agbandje-Mckenna, M]]
[[Category: Kurian, J.J]]
[[Category: Mckenna, R]]