5jn6 - Revision history

OCA at 10:11, 14 June 2023

OCA — Wed, 14 Jun 2023 10:11:36 GMT

←Older revision		Revision as of 10:11, 14 June 2023
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	==The NMR Solution Structure of RPA3313==		==The NMR Solution Structure of RPA3313==
-	<StructureSection load='5jn6' size='340' side='right'caption='[[5jn6~~]], [[NMR_Ensembles_of_Models \| 21 NMR models~~]]' scene=''>	+	<StructureSection load='5jn6' size='340' side='right'caption='[[5jn6]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jn6]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Rhopa Rhopa~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JN6 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5JN6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jn6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_CGA009 Rhodopseudomonas palustris CGA009]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JN6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JN6 FirstGlance]. <br>
-	</td></tr>~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RPA3313 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=258594 RHOPA])</td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jn6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jn6 OCA], [https://pdbe.org/5jn6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jn6 RCSB], [https://www.ebi.ac.uk/pdbsum/5jn6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jn6 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5jn6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jn6 OCA], [~~http~~://pdbe.org/5jn6 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5jn6 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5jn6 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5jn6 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q6N4M4_RHOPA Q6N4M4_RHOPA]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Rhopa~~]]	+	[[Category: Rhodopseudomonas palustris CGA009]]
-	[[Category: Catazaro, J]]	+	[[Category: Catazaro J]]
-	[[Category: Lowe~~, A J~~]]	+	[[Category: Lowe AJ]]
-	[[Category: Powers, R]]	+	[[Category: Powers R]]
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Protein-protein interaction]]~~	+
-	~~[[Category: Ribosome]]~~	+
-	~~[[Category: Sgc]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 16:23, 11 December 2019

OCA — Wed, 11 Dec 2019 16:23:25 GMT

←Older revision		Revision as of 16:23, 11 December 2019
Line 1:		Line 1:

	==The NMR Solution Structure of RPA3313==		==The NMR Solution Structure of RPA3313==
-	<StructureSection load='5jn6' size='340' side='right' caption='[[5jn6]], [[NMR_Ensembles_of_Models \| 21 NMR models]]' scene=''>	+	<StructureSection load='5jn6' size='340' side='right'caption='[[5jn6]], [[NMR_Ensembles_of_Models \| 21 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5jn6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhopa Rhopa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JN6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JN6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[5jn6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhopa Rhopa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JN6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JN6 FirstGlance]. <br>
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Rhopa]]		[[Category: Rhopa]]
	[[Category: Catazaro, J]]		[[Category: Catazaro, J]]

OCA at 17:59, 15 November 2017

OCA — Wed, 15 Nov 2017 17:59:30 GMT

←Older revision		Revision as of 17:59, 15 November 2017
Line 3:		Line 3:
	<StructureSection load='5jn6' size='340' side='right' caption='[[5jn6]], [[NMR_Ensembles_of_Models \| 21 NMR models]]' scene=''>		<StructureSection load='5jn6' size='340' side='right' caption='[[5jn6]], [[NMR_Ensembles_of_Models \| 21 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jn6]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JN6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JN6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jn6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhopa Rhopa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JN6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JN6 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jn6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jn6 OCA], [http://pdbe.org/5jn6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jn6 RCSB], [http://www.ebi.ac.uk/pdbsum/5jn6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jn6 ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RPA3313 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=258594 RHOPA])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jn6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jn6 OCA], [http://pdbe.org/5jn6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jn6 RCSB], [http://www.ebi.ac.uk/pdbsum/5jn6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jn6 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 19:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Rhopa]]
	[[Category: Catazaro, J]]		[[Category: Catazaro, J]]
	[[Category: Lowe, A J]]		[[Category: Lowe, A J]]

OCA at 03:38, 10 December 2016

OCA — Sat, 10 Dec 2016 03:38:00 GMT

←Older revision		Revision as of 03:38, 10 December 2016
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5jn6]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JN6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JN6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[5jn6]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JN6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JN6 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jn6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jn6 OCA], [http://pdbe.org/5jn6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jn6 RCSB], [http://www.ebi.ac.uk/pdbsum/5jn6 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jn6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jn6 OCA], [http://pdbe.org/5jn6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jn6 RCSB], [http://www.ebi.ac.uk/pdbsum/5jn6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jn6 ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Protein function elucidation often relies heavily on amino acid sequence analysis and other bioinformatics approaches. The reliance is extended to structure homology modeling for ligand docking and protein-protein interaction mapping. However, sequence analysis of RPA3313 exposes a large, unannotated class of hypothetical proteins mostly from the Rhizobiales order. In the absence of sequence and structure information, further functional elucidation of this class of proteins has been significantly hindered. A high quality NMR structure of RPA3313 reveals that the protein forms a novel split betabetaalphabeta fold with a conserved ligand binding pocket between the first beta-strand and the N-terminus of the alpha-helix. Conserved residue analysis and protein-protein interaction prediction analyses reveal multiple protein binding sites and conserved functional residues. Results of a mass spectrometry proteomic analysis strongly point toward interaction with the ribosome and its subunits. The combined structural and proteomic analyses suggest that RPA3313 by itself or in a larger complex may assist in the transportation of substrates to or from the ribosome for further processing. Proteins 2016. (c) 2016 Wiley Periodicals, Inc.
		+
		+	The NMR solution structure and function of RPA3313: a putative ribosomal transport protein from Rhodopseudomonas palustris.,Catazaro J, Lowe AJ, Cerny RL, Powers R Proteins. 2016 Nov 1. doi: 10.1002/prot.25201. PMID:27802574<ref>PMID:27802574</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5jn6" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA: Protected "5jn6" [edit=sysop:move=sysop]

OCA — Sun, 15 May 2016 17:14:13 GMT

Protected "5jn6" [edit=sysop:move=sysop]

←Older revision

Revision as of 17:14, 15 May 2016

OCA: New page: ==The NMR Solution Structure of RPA3313== == Structural hig...

OCA — Sun, 15 May 2016 17:14:05 GMT

New page: ==The NMR Solution Structure of RPA3313== <StructureSection load='5jn6' size='340' side='right' caption='5jn6, 21 NMR models' scene=''> == Structural hig...

New page

==The NMR Solution Structure of RPA3313==
<StructureSection load='5jn6' size='340' side='right' caption='[[5jn6]], [[NMR_Ensembles_of_Models | 21 NMR models]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[5jn6]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JN6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JN6 FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jn6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jn6 OCA], [http://pdbe.org/5jn6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jn6 RCSB], [http://www.ebi.ac.uk/pdbsum/5jn6 PDBsum]</span></td></tr>
</table>
__TOC__
</StructureSection>
[[Category: Catazaro, J]]
[[Category: Lowe, A J]]
[[Category: Powers, R]]
[[Category: Structural genomic]]
[[Category: Protein-protein interaction]]
[[Category: Ribosome]]
[[Category: Sgc]]
[[Category: Unknown function]]