5jr5 - Revision history

OCA at 19:03, 20 September 2023

OCA — Wed, 20 Sep 2023 19:03:06 GMT

←Older revision		Revision as of 19:03, 20 September 2023
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	<StructureSection load='5jr5' size='340' side='right'caption='[[5jr5]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='5jr5' size='340' side='right'caption='[[5jr5]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jr5]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_43588 Atcc 43588~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JR5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5JR5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jr5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylothermus_marinus Staphylothermus marinus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JR5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JR5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PS9:OCTATHIOCANE'>PS9</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5jr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jr5 OCA], [~~http~~://pdbe.org/5jr5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5jr5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5jr5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5jr5 ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PS9:OCTATHIOCANE'>PS9</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jr5 OCA], [https://pdbe.org/5jr5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jr5 RCSB], [https://www.ebi.ac.uk/pdbsum/5jr5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jr5 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q54436_STAMA Q54436_STAMA]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 43588]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~McDougall, M~~]]	+	[[Category: Staphylothermus marinus]]
-	[[Category: ~~Meier,~~ M]]	+	[[Category: McDougall M]]
-	[[Category: ~~Stetefeld, J~~]]	+	[[Category: Meier M]]
-	[[Category: ~~Archaea]]~~	+	[[Category: Stetefeld J]]
-	~~[[Category: Coiled-coil]]~~	+
-	~~[[Category: Nanotube]]~~	+
-	~~[[Category: Protein binding]]~~	+
-	~~[[Category: Sulfur~~]]	+

OCA at 11:34, 17 June 2020

OCA — Wed, 17 Jun 2020 11:34:26 GMT

←Older revision		Revision as of 11:34, 17 June 2020
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	==RHCC in Complex with Elemental Sulfur==		==RHCC in Complex with Elemental Sulfur==
-	<StructureSection load='5jr5' size='340' side='right' caption='[[5jr5]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='5jr5' size='340' side='right'caption='[[5jr5]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jr5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43588 Atcc 43588]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JR5 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5JR5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jr5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43588 Atcc 43588]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JR5 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5JR5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PS9:OCTATHIOCANE'>PS9</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PS9:OCTATHIOCANE'>PS9</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5jr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jr5 OCA], [http://pdbe.org/5jr5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jr5 RCSB], [http://www.ebi.ac.uk/pdbsum/5jr5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jr5 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5jr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jr5 OCA], [http://pdbe.org/5jr5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jr5 RCSB], [http://www.ebi.ac.uk/pdbsum/5jr5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jr5 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</StructureSection>		</StructureSection>
	[[Category: Atcc 43588]]		[[Category: Atcc 43588]]
		+	[[Category: Large Structures]]
	[[Category: McDougall, M]]		[[Category: McDougall, M]]
	[[Category: Meier, M]]		[[Category: Meier, M]]

OCA at 10:08, 15 November 2017

OCA — Wed, 15 Nov 2017 10:08:50 GMT

←Older revision		Revision as of 10:08, 15 November 2017
Line 3:		Line 3:
	<StructureSection load='5jr5' size='340' side='right' caption='[[5jr5]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='5jr5' size='340' side='right' caption='[[5jr5]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jr5]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JR5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JR5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jr5]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43588 Atcc 43588]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JR5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JR5 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PS9:OCTATHIOCANE'>PS9</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PS9:OCTATHIOCANE'>PS9</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jr5 OCA], [http://pdbe.org/5jr5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jr5 RCSB], [http://www.ebi.ac.uk/pdbsum/5jr5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jr5 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jr5 OCA], [http://pdbe.org/5jr5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jr5 RCSB], [http://www.ebi.ac.uk/pdbsum/5jr5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jr5 ProSAT]</span></td></tr>
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 43588]]
	[[Category: McDougall, M]]		[[Category: McDougall, M]]
	[[Category: Meier, M]]		[[Category: Meier, M]]

OCA at 07:05, 25 October 2017

OCA — Wed, 25 Oct 2017 07:05:08 GMT

←Older revision		Revision as of 07:05, 25 October 2017
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jr5 OCA], [http://pdbe.org/5jr5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jr5 RCSB], [http://www.ebi.ac.uk/pdbsum/5jr5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jr5 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jr5 OCA], [http://pdbe.org/5jr5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jr5 RCSB], [http://www.ebi.ac.uk/pdbsum/5jr5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jr5 ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Elemental sulfur exists primarily as an S80 ring and serves as terminal electron acceptor for a variety of sulfur-fermenting bacteria. Hyperthermophilic archaea from black smoker vents are an exciting research tool to advance our knowledge of sulfur respiration under extreme conditions. Here, we use a hybrid method approach to demonstrate that the proteinaceous cavities of the S-layer nanotube of the hyperthermophilic archaeon Staphylothermus marinus act as a storage reservoir for cyclo-octasulfur S8. Fully atomistic molecular dynamics (MD) simulations were performed and the method of multiconfigurational thermodynamic integration was employed to compute the absolute free energy for transferring a ring of elemental sulfur S8 from an aqueous bath into the largest hydrophobic cavity of a fragment of archaeal tetrabrachion. Comparisons with earlier MD studies of the free energy of hydration as a function of water occupancy in the same cavity of archaeal tetrabrachion show that the sulfur ring is energetically favored over water.
		+
		+	Archaea S-layer nanotube from a "black smoker" in complex with cyclo-octasulfur (S8 ) rings.,McDougall M, Francisco O, Harder-Viddal C, Roshko R, Meier M, Stetefeld J Proteins. 2017 Sep 14. doi: 10.1002/prot.25385. PMID:28905430<ref>PMID:28905430</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5jr5" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 12:56, 10 May 2017

OCA — Wed, 10 May 2017 12:56:59 GMT

←Older revision		Revision as of 12:56, 10 May 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5jr5 is ~~ON HOLD until Paper Publication~~	+	==RHCC in Complex with Elemental Sulfur==
-		+	<StructureSection load='5jr5' size='340' side='right' caption='[[5jr5]], [[Resolution\|resolution]] 1.90Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5jr5]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JR5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JR5 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PS9:OCTATHIOCANE'>PS9</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jr5 OCA], [http://pdbe.org/5jr5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jr5 RCSB], [http://www.ebi.ac.uk/pdbsum/5jr5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jr5 ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: McDougall, M]]
		+	[[Category: Meier, M]]
		+	[[Category: Stetefeld, J]]
		+	[[Category: Archaea]]
		+	[[Category: Coiled-coil]]
		+	[[Category: Nanotube]]
		+	[[Category: Protein binding]]
		+	[[Category: Sulfur]]

OCA at 20:35, 23 June 2016

OCA — Thu, 23 Jun 2016 20:35:45 GMT

←Older revision		Revision as of 20:35, 23 June 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5jr5 is ON HOLD	+	The entry 5jr5 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5jr5" [edit=sysop:move=sysop]

OCA — Sun, 15 May 2016 15:47:42 GMT

Protected "5jr5" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:47, 15 May 2016

OCA: New page: '''Unreleased structure''' The entry 5jr5 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Sun, 15 May 2016 15:47:41 GMT

New page: '''Unreleased structure''' The entry 5jr5 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5jr5 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]