5jvo - Revision history

OCA at 19:11, 20 September 2023

OCA — Wed, 20 Sep 2023 19:11:31 GMT

←Older revision		Revision as of 19:11, 20 September 2023
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	<StructureSection load='5jvo' size='340' side='right'caption='[[5jvo]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='5jvo' size='340' side='right'caption='[[5jvo]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jvo]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_pseudotuberculosis"_buchanan_1911 "bacillus~~ pseudotuberculosis~~" buchanan 1911~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JVO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5JVO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jvo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_pseudotuberculosis Corynebacterium pseudotuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JVO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JVO FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~, ~~<scene name='pdbligand=TYR:TYROSINE'>TYR</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~argR, CpE19_0967 ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=1719 "Bacillus pseudotuberculosis" Buchanan 1911])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TYR:TYROSINE'>TYR</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5jvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvo OCA], [~~http~~://pdbe.org/5jvo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5jvo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5jvo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvo ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvo OCA], [https://pdbe.org/5jvo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jvo RCSB], [https://www.ebi.ac.uk/pdbsum/5jvo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvo ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~A0A0E3UAP8_CORPS A0A0E3UAP8_CORPS]~~] Regulates arginine biosynthesis genes.[HAMAP-Rule:MF_00173]	+	[https://www.uniprot.org/uniprot/D9QA55_CORP2 D9QA55_CORP2] Regulates arginine biosynthesis genes.[ARBA:ARBA00002095][HAMAP-Rule:MF_00173]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ pseudotuberculosis ~~buchanan 1911~~]]	+	[[Category: Corynebacterium pseudotuberculosis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Arni~~, R K~~]]	+	[[Category: Arni RK]]
-	[[Category: Mariutti~~, R B~~]]	+	[[Category: Mariutti RB]]
-	[[Category: Murakami~~, M T~~]]	+	[[Category: Murakami MT]]
-	[[Category: Ullah, A]]	+	[[Category: Ullah A]]
-	~~[[Category: Arginine repressor]]~~	+
-	~~[[Category: Dna binding protein~~]]	+

OCA at 11:41, 17 June 2020

OCA — Wed, 17 Jun 2020 11:41:35 GMT

←Older revision		Revision as of 11:41, 17 June 2020
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	==Crystal structure of the Arginine Repressor from the pathogenic bacterium Corynebacterium pseudotuberculosis==		==Crystal structure of the Arginine Repressor from the pathogenic bacterium Corynebacterium pseudotuberculosis==
-	<StructureSection load='5jvo' size='340' side='right' caption='[[5jvo]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='5jvo' size='340' side='right'caption='[[5jvo]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jvo]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JVO OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5JVO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jvo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pseudotuberculosis"_buchanan_1911 "bacillus pseudotuberculosis" buchanan 1911]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JVO OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5JVO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TYR:TYROSINE'>TYR</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TYR:TYROSINE'>TYR</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5jvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvo OCA], [http://pdbe.org/5jvo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jvo RCSB], [http://www.ebi.ac.uk/pdbsum/5jvo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvo ProSAT]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argR, CpE19_0967 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1719 "Bacillus pseudotuberculosis" Buchanan 1911])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5jvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvo OCA], [http://pdbe.org/5jvo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jvo RCSB], [http://www.ebi.ac.uk/pdbsum/5jvo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvo ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	</div>		</div>
	<div class="pdbe-citations 5jvo" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5jvo" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Arginine repressor 3D structures\|Arginine repressor 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus pseudotuberculosis buchanan 1911]]
		+	[[Category: Large Structures]]
	[[Category: Arni, R K]]		[[Category: Arni, R K]]
	[[Category: Mariutti, R B]]		[[Category: Mariutti, R B]]

OCA at 13:56, 10 September 2016

OCA — Sat, 10 Sep 2016 13:56:53 GMT

←Older revision		Revision as of 13:56, 10 September 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5jvo is ~~ON HOLD~~	+	==Crystal structure of the Arginine Repressor from the pathogenic bacterium Corynebacterium pseudotuberculosis==
		+	<StructureSection load='5jvo' size='340' side='right' caption='[[5jvo]], [[Resolution\|resolution]] 1.90Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5jvo]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JVO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JVO FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TYR:TYROSINE'>TYR</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvo OCA], [http://pdbe.org/5jvo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jvo RCSB], [http://www.ebi.ac.uk/pdbsum/5jvo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvo ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/A0A0E3UAP8_CORPS A0A0E3UAP8_CORPS]] Regulates arginine biosynthesis genes.[HAMAP-Rule:MF_00173]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The arginine repressor (ArgR) regulates arginine biosynthesis in a number of microorganisms and consists of two domains interlinked by a short peptide; the N-terminal domain is involved in DNA binding and the C-terminal domain binds arginine and forms a hexamer made-up of a dimer of trimers. The crystal structure of the C-terminal domain of ArgR from the pathogenic Corynebacterium pseudotuberculosis determined at 1.9 A resolution contains a tightly bound tyrosine at the arginine-binding site indicating hitherto unobserved promiscuity. Structural analysis of the binding pocket displays clear molecular adaptations to accommodate tyrosine binding suggesting the possible existence of an alternative regulatory process in this pathogenic bacterium.

-	~~Authors: Mariutti, R.B~~., ~~Ullah~~, A., Murakami, M.T., ~~Arni, R~~.K.	+	Tyrosine binding and promiscuity in the arginine repressor from the pathogenic bacterium Corynebacterium pseudotuberculosis.,Mariutti RB, Ullah A, Araujo GC, Murakami MT, Arni RK Biochem Biophys Res Commun. 2016 Jul 8;475(4):350-5. doi:, 10.1016/j.bbrc.2016.05.091. Epub 2016 May 24. PMID:27233609<ref>PMID:27233609</ref>

-	~~Description: Crystal structure~~ of the ~~Arginine Repressor from the pathogenic bacterium Corynebacterium pseudotuberculosis~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
-	[[Category: Arni, R.K]]	+	<div class="pdbe-citations 5jvo" style="background-color:#fffaf0;"></div>
-	[[Category: Mariutti, R.B]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Arni, R K]]
		+	[[Category: Mariutti, R B]]
		+	[[Category: Murakami, M T]]
	[[Category: Ullah, A]]		[[Category: Ullah, A]]
-	[[Category: ~~Murakami, M.T~~]]	+	[[Category: Arginine repressor]]
		+	[[Category: Dna binding protein]]

OCA: Protected "5jvo" [edit=sysop:move=sysop]

OCA — Wed, 01 Jun 2016 13:54:43 GMT

Protected "5jvo" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:54, 1 June 2016

OCA: New page: '''Unreleased structure''' The entry 5jvo is ON HOLD Authors: Mariutti, R.B., Ullah, A., Murakami, M.T., Arni, R.K. Description: Crystal structure of the Arginine Repressor from the pa...

OCA — Wed, 01 Jun 2016 13:54:42 GMT

New page: '''Unreleased structure''' The entry 5jvo is ON HOLD Authors: Mariutti, R.B., Ullah, A., Murakami, M.T., Arni, R.K. Description: Crystal structure of the Arginine Repressor from the pa...

New page

'''Unreleased structure'''

The entry 5jvo is ON HOLD

Authors: Mariutti, R.B., Ullah, A., Murakami, M.T., Arni, R.K.

Description: Crystal structure of the Arginine Repressor from the pathogenic bacterium Corynebacterium pseudotuberculosis
[[Category: Unreleased Structures]]
[[Category: Arni, R.K]]
[[Category: Mariutti, R.B]]
[[Category: Ullah, A]]
[[Category: Murakami, M.T]]