5jxb - Revision history

OCA at 19:13, 20 September 2023

OCA — Wed, 20 Sep 2023 19:13:55 GMT

←Older revision		Revision as of 19:13, 20 September 2023
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	<StructureSection load='5jxb' size='340' side='right'caption='[[5jxb]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='5jxb' size='340' side='right'caption='[[5jxb]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jxb]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JXB OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5JXB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jxb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JXB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JXB FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~DLG4~~, ~~PSD95 (~~[~~http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=9606 HUMAN])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.9Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5jxb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jxb OCA], [~~http~~://pdbe.org/5jxb PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5jxb RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5jxb PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5jxb ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jxb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jxb OCA], [https://pdbe.org/5jxb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jxb RCSB], [https://www.ebi.ac.uk/pdbsum/5jxb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jxb ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/DLG4_HUMAN DLG4_HUMAN]] Interacts with the cytoplasmic tail of NMDA receptor subunits and shaker-type potassium channels. Required for synaptic plasticity associated with NMDA receptor signaling. Overexpression or depletion of DLG4 changes the ratio of excitatory to inhibitory synapses in hippocampal neurons. May reduce the amplitude of ASIC3 acid-evoked currents by retaining the channel intracellularly. May regulate the intracellular trafficking of ADR1B (By similarity).	+	[https://www.uniprot.org/uniprot/DLG4_HUMAN DLG4_HUMAN] Interacts with the cytoplasmic tail of NMDA receptor subunits and shaker-type potassium channels. Required for synaptic plasticity associated with NMDA receptor signaling. Overexpression or depletion of DLG4 changes the ratio of excitatory to inhibitory synapses in hippocampal neurons. May reduce the amplitude of ASIC3 acid-evoked currents by retaining the channel intracellularly. May regulate the intracellular trafficking of ADR1B (By similarity).[https://www.uniprot.org/uniprot/J3QQ18_MOUSE J3QQ18_MOUSE]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 5jxb" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5jxb" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Postsynaptic density protein 3D structures\|Postsynaptic density protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Shang, Y~~]]	+	[[Category: Mus musculus]]
-	[[Category: ~~Zhang, M~~]]	+	[[Category: Shang Y]]
-	[[Category: ~~Cell adhesion]]~~	+	[[Category: Zhang M]]
-	~~[[Category: Extension]]~~	+
-	~~[[Category: Pdz]]~~	+
-	~~[[Category: Psd-95]]~~	+
-	~~[[Category: Syngap~~]]	+

OCA at 11:43, 17 June 2020

OCA — Wed, 17 Jun 2020 11:43:58 GMT

←Older revision		Revision as of 11:43, 17 June 2020
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	==PSD-95 extended PDZ3 in complex with SynGAP PBM==		==PSD-95 extended PDZ3 in complex with SynGAP PBM==
-	<StructureSection load='5jxb' size='340' side='right' caption='[[5jxb]], [[Resolution\|resolution]] 2.90Å' scene=''>	+	<StructureSection load='5jxb' size='340' side='right'caption='[[5jxb]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jxb]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JXB OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5JXB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jxb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JXB OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5JXB FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5jxb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jxb OCA], [http://pdbe.org/5jxb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jxb RCSB], [http://www.ebi.ac.uk/pdbsum/5jxb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jxb ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DLG4, PSD95 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5jxb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jxb OCA], [http://pdbe.org/5jxb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jxb RCSB], [http://www.ebi.ac.uk/pdbsum/5jxb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jxb ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Shang, Y]]		[[Category: Shang, Y]]
	[[Category: Zhang, M]]		[[Category: Zhang, M]]

OCA at 16:46, 3 October 2016

OCA — Mon, 03 Oct 2016 16:46:41 GMT

←Older revision		Revision as of 16:46, 3 October 2016
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-	'''Unreleased structure'''

-	~~The entry~~ 5jxb is ~~ON HOLD until Paper~~ Publication	+	==PSD-95 extended PDZ3 in complex with SynGAP PBM==
		+	<StructureSection load='5jxb' size='340' side='right' caption='[[5jxb]], [[Resolution\|resolution]] 2.90Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5jxb]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JXB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JXB FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jxb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jxb OCA], [http://pdbe.org/5jxb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jxb RCSB], [http://www.ebi.ac.uk/pdbsum/5jxb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jxb ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DLG4_HUMAN DLG4_HUMAN]] Interacts with the cytoplasmic tail of NMDA receptor subunits and shaker-type potassium channels. Required for synaptic plasticity associated with NMDA receptor signaling. Overexpression or depletion of DLG4 changes the ratio of excitatory to inhibitory synapses in hippocampal neurons. May reduce the amplitude of ASIC3 acid-evoked currents by retaining the channel intracellularly. May regulate the intracellular trafficking of ADR1B (By similarity).
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Postsynaptic densities (PSDs) are membrane semi-enclosed, submicron protein-enriched cellular compartments beneath postsynaptic membranes, which constantly exchange their components with bulk aqueous cytoplasm in synaptic spines. Formation and activity-dependent modulation of PSDs is considered as one of the most basic molecular events governing synaptic plasticity in the nervous system. In this study, we discover that SynGAP, one of the most abundant PSD proteins and a Ras/Rap GTPase activator, forms a homo-trimer and binds to multiple copies of PSD-95. Binding of SynGAP to PSD-95 induces phase separation of the complex, forming highly concentrated liquid-like droplets reminiscent of the PSD. The multivalent nature of the SynGAP/PSD-95 complex is critical for the phase separation to occur and for proper activity-dependent SynGAP dispersions from the PSD. In addition to revealing a dynamic anchoring mechanism of SynGAP at the PSD, our results also suggest a model for phase-transition-mediated formation of PSD.

-	~~Authors~~:	+	Phase Transition in Postsynaptic Densities Underlies Formation of Synaptic Complexes and Synaptic Plasticity.,Zeng M, Shang Y, Araki Y, Guo T, Huganir RL, Zhang M Cell. 2016 Aug 25;166(5):1163-1175.e12. doi: 10.1016/j.cell.2016.07.008. PMID:27565345<ref>PMID:27565345</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5jxb" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Shang, Y]]
		+	[[Category: Zhang, M]]
		+	[[Category: Cell adhesion]]
		+	[[Category: Extension]]
		+	[[Category: Pdz]]
		+	[[Category: Psd-95]]
		+	[[Category: Syngap]]

OCA at 10:15, 21 September 2016

OCA — Wed, 21 Sep 2016 10:15:38 GMT

←Older revision		Revision as of 10:15, 21 September 2016
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5jxb is ON HOLD	+	The entry 5jxb is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5jxb" [edit=sysop:move=sysop]

OCA — Wed, 01 Jun 2016 13:59:50 GMT

Protected "5jxb" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:59, 1 June 2016

OCA: New page: '''Unreleased structure''' The entry 5jxb is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 01 Jun 2016 13:59:49 GMT

New page: '''Unreleased structure''' The entry 5jxb is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5jxb is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]