5jxv - Revision history

OCA at 10:12, 14 June 2023

OCA — Wed, 14 Jun 2023 10:12:20 GMT

←Older revision		Revision as of 10:12, 14 June 2023
Line 1:		Line 1:

	==Solid-state MAS NMR structure of immunoglobulin beta 1 binding domain of protein G (GB1)==		==Solid-state MAS NMR structure of immunoglobulin beta 1 binding domain of protein G (GB1)==
-	<StructureSection load='5jxv' size='340' side='right'caption='[[5jxv~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='5jxv' size='340' side='right'caption='[[5jxv]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jxv]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"streptococcus_equisimilis"_frost_and_engelbrecht_1936_(human_strains) "streptococcus~~ equisimilis~~" frost and engelbrecht 1936 (human strains)~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JXV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5JXV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jxv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_dysgalactiae_subsp._equisimilis Streptococcus dysgalactiae subsp. equisimilis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JXV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JXV FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">WH79_02070 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119602 "Streptococcus equisimilis" Frost and Engelbrecht 1936 (human strains)])</td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jxv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jxv OCA], [https://pdbe.org/5jxv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jxv RCSB], [https://www.ebi.ac.uk/pdbsum/5jxv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jxv ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5jxv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jxv OCA], [~~http~~://pdbe.org/5jxv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5jxv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5jxv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5jxv ProSAT]</span></td></tr>	+
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 21:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Akopjana, I]]	+	[[Category: Streptococcus dysgalactiae subsp. equisimilis]]
-	[[Category: Andreas~~, L B~~]]	+	[[Category: Akopjana I]]
-	[[Category: Bertarello, A]]	+	[[Category: Andreas LB]]
-	[[Category: Emsley, L]]	+	[[Category: Bertarello A]]
-	[[Category: Engelke, F]]	+	[[Category: Cala-De Paepe D]]
-	[[Category: Herrmann, T]]	+	[[Category: Emsley L]]
-	[[Category: Jaudzems, K]]	+	[[Category: Engelke F]]
-	[[Category: Knott, B]]	+	[[Category: Herrmann T]]
-	[[Category: Kotelovica, S]]	+	[[Category: Jaudzems K]]
-	[[Category: Lalli, D]]	+	[[Category: Knott B]]
-	[[Category: ~~Lesage, A]]~~	+	[[Category: Kotelovica S]]
-	~~[[Category:~~ Marchand, T Le]]	+	[[Category: Lalli D]]
-	[[Category: ~~Paepe, D Cala-De~~]]	+	[[Category: Le Marchand T]]
-	[[Category: Pintacuda, G]]	+	[[Category: Lesage A]]
-	[[Category: Stanek, J]]	+	[[Category: Pintacuda G]]
-	[[Category: Tars, K]]	+	[[Category: Stanek J]]
-	[[Category: Wegner, S]]	+	[[Category: Tars K]]
-	~~[[Category: Alpha beta]]~~	+	[[Category: Wegner S]]
-	~~[[Category: Globular]]~~	+
-	~~[[Category: Immune system~~]]	+

OCA at 06:21, 21 August 2019

OCA — Wed, 21 Aug 2019 06:21:22 GMT

←Older revision		Revision as of 06:21, 21 August 2019
Line 1:		Line 1:

	==Solid-state MAS NMR structure of immunoglobulin beta 1 binding domain of protein G (GB1)==		==Solid-state MAS NMR structure of immunoglobulin beta 1 binding domain of protein G (GB1)==
-	<StructureSection load='5jxv' size='340' side='right' caption='[[5jxv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='5jxv' size='340' side='right'caption='[[5jxv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5jxv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"streptococcus_equisimilis"_frost_and_engelbrecht_1936_(human_strains) "streptococcus equisimilis" frost and engelbrecht 1936 (human strains)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JXV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JXV FirstGlance]. <br>		<table><tr><td colspan='2'>[[5jxv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"streptococcus_equisimilis"_frost_and_engelbrecht_1936_(human_strains) "streptococcus equisimilis" frost and engelbrecht 1936 (human strains)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JXV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JXV FirstGlance]. <br>
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Akopjana, I]]		[[Category: Akopjana, I]]
	[[Category: Andreas, L B]]		[[Category: Andreas, L B]]

OCA at 06:38, 7 February 2018

OCA — Wed, 07 Feb 2018 06:38:44 GMT

←Older revision		Revision as of 06:38, 7 February 2018
Line 3:		Line 3:
	<StructureSection load='5jxv' size='340' side='right' caption='[[5jxv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='5jxv' size='340' side='right' caption='[[5jxv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jxv]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JXV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JXV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jxv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"streptococcus_equisimilis"_frost_and_engelbrecht_1936_(human_strains) "streptococcus equisimilis" frost and engelbrecht 1936 (human strains)]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JXV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JXV FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jxv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jxv OCA], [http://pdbe.org/5jxv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jxv RCSB], [http://www.ebi.ac.uk/pdbsum/5jxv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jxv ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">WH79_02070 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119602 "Streptococcus equisimilis" Frost and Engelbrecht 1936 (human strains)])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jxv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jxv OCA], [http://pdbe.org/5jxv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jxv RCSB], [http://www.ebi.ac.uk/pdbsum/5jxv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jxv ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 05:08, 9 September 2016

OCA — Fri, 09 Sep 2016 05:08:00 GMT

←Older revision		Revision as of 05:08, 9 September 2016
Line 6:		Line 6:
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jxv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jxv OCA], [http://pdbe.org/5jxv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jxv RCSB], [http://www.ebi.ac.uk/pdbsum/5jxv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jxv ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jxv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jxv OCA], [http://pdbe.org/5jxv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jxv RCSB], [http://www.ebi.ac.uk/pdbsum/5jxv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jxv ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Protein structure determination by proton-detected magic-angle spinning (MAS) NMR has focused on highly deuterated samples, in which only a small number of protons are introduced and observation of signals from side chains is extremely limited. Here, we show in two fully protonated proteins that, at 100-kHz MAS and above, spectral resolution is high enough to detect resolved correlations from amide and side-chain protons of all residue types, and to reliably measure a dense network of (1)H-(1)H proximities that define a protein structure. The high data quality allowed the correct identification of internuclear distance restraints encoded in 3D spectra with automated data analysis, resulting in accurate, unbiased, and fast structure determination. Additionally, we find that narrower proton resonance lines, longer coherence lifetimes, and improved magnetization transfer offset the reduced sample size at 100-kHz spinning and above. Less than 2 weeks of experiment time and a single 0.5-mg sample was sufficient for the acquisition of all data necessary for backbone and side-chain resonance assignment and unsupervised structure determination. We expect the technique to pave the way for atomic-resolution structure analysis applicable to a wide range of proteins.
		+
		+	Structure of fully protonated proteins by proton-detected magic-angle spinning NMR.,Andreas LB, Jaudzems K, Stanek J, Lalli D, Bertarello A, Le Marchand T, Cala-De Paepe D, Kotelovica S, Akopjana I, Knott B, Wegner S, Engelke F, Lesage A, Emsley L, Tars K, Herrmann T, Pintacuda G Proc Natl Acad Sci U S A. 2016 Aug 16;113(33):9187-92. doi:, 10.1073/pnas.1602248113. Epub 2016 Aug 3. PMID:27489348<ref>PMID:27489348</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5jxv" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 16:28, 10 August 2016

OCA — Wed, 10 Aug 2016 16:28:20 GMT

←Older revision		Revision as of 16:28, 10 August 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5jxv ~~is ON HOLD~~	+	==Solid-state MAS NMR structure of immunoglobulin beta 1 binding domain of protein G (GB1)==
-		+	<StructureSection load='5jxv' size='340' side='right' caption='[[5jxv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
-	~~Authors~~: ~~Andreas, L~~.B.~~, Jaudzems, K~~.~~, Stanek, J~~.~~, Lalli, D~~.~~, Bertarello, A~~.~~, Le Marchand, T~~.~~, Cala~~-~~De Paepe, D~~.~~, Kotelovica, S~~.~~, Akopjana, I~~.~~, Knott, B~~.~~, Wegner, S~~., ~~Engelke, F~~., ~~Lesage, A~~., ~~Emsley, L~~., ~~Tars, K~~., ~~Herrmann, T~~., ~~Pintacuda~~, G.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5jxv]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JXV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JXV FirstGlance]. <br>
-	~~Description~~: ~~Solid-state MAS NMR structure of immunoglobulin beta 1 binding domain of protein G (GB1)~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jxv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jxv OCA], [http://pdbe.org/5jxv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jxv RCSB], [http://www.ebi.ac.uk/pdbsum/5jxv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jxv ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Akopjana, I]]
		+	[[Category: Andreas, L B]]
		+	[[Category: Bertarello, A]]
		+	[[Category: Emsley, L]]
		+	[[Category: Engelke, F]]
	[[Category: Herrmann, T]]		[[Category: Herrmann, T]]
-	[[Category: ~~Le Marchand~~, T]]	+	[[Category: Jaudzems, K]]
-	[[Category: ~~Bertarello~~, A]]	+	[[Category: Knott, B]]
-	[[Category: ~~Wegner~~, S]]	+	[[Category: Kotelovica, S]]
	[[Category: Lalli, D]]		[[Category: Lalli, D]]
-	[[Category: Jaudzems, K]]
-	[[Category: Tars, K]]
-	[[Category: Engelke, F]]
	[[Category: Lesage, A]]		[[Category: Lesage, A]]
		+	[[Category: Marchand, T Le]]
		+	[[Category: Paepe, D Cala-De]]
		+	[[Category: Pintacuda, G]]
	[[Category: Stanek, J]]		[[Category: Stanek, J]]
-	[[Category: ~~Emsley~~, L]]	+	[[Category: Tars, K]]
-	[[Category: ~~Akopjana~~, I]]	+	[[Category: Wegner, S]]
-	[[Category: ~~Andreas, L.B~~]]	+	[[Category: Alpha beta]]
-	[[Category: ~~Cala-De Paepe, D~~]]	+	[[Category: Globular]]
-	[[Category: ~~Kotelovica, S]]~~	+	[[Category: Immune system]]
-	~~[[Category: Pintacuda, G]]~~	+
-	~~[[Category: Knott, B~~]]	+

OCA: Protected "5jxv" [edit=sysop:move=sysop]

OCA — Wed, 01 Jun 2016 14:01:08 GMT

Protected "5jxv" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:01, 1 June 2016

OCA: New page: '''Unreleased structure''' The entry 5jxv is ON HOLD Authors: Andreas, L.B., Jaudzems, K., Stanek, J., Lalli, D., Bertarello, A., Le Marchand, T., Cala-De Paepe, D., Kotelovica, S., Ako...

OCA — Wed, 01 Jun 2016 14:01:06 GMT

New page: '''Unreleased structure''' The entry 5jxv is ON HOLD Authors: Andreas, L.B., Jaudzems, K., Stanek, J., Lalli, D., Bertarello, A., Le Marchand, T., Cala-De Paepe, D., Kotelovica, S., Ako...

New page

'''Unreleased structure'''

The entry 5jxv is ON HOLD

Authors: Andreas, L.B., Jaudzems, K., Stanek, J., Lalli, D., Bertarello, A., Le Marchand, T., Cala-De Paepe, D., Kotelovica, S., Akopjana, I., Knott, B., Wegner, S., Engelke, F., Lesage, A., Emsley, L., Tars, K., Herrmann, T., Pintacuda, G.

Description: Solid-state MAS NMR structure of immunoglobulin beta 1 binding domain of protein G (GB1)
[[Category: Unreleased Structures]]
[[Category: Herrmann, T]]
[[Category: Le Marchand, T]]
[[Category: Bertarello, A]]
[[Category: Wegner, S]]
[[Category: Lalli, D]]
[[Category: Jaudzems, K]]
[[Category: Tars, K]]
[[Category: Engelke, F]]
[[Category: Lesage, A]]
[[Category: Stanek, J]]
[[Category: Emsley, L]]
[[Category: Akopjana, I]]
[[Category: Andreas, L.B]]
[[Category: Cala-De Paepe, D]]
[[Category: Kotelovica, S]]
[[Category: Pintacuda, G]]
[[Category: Knott, B]]