5jzr - Revision history

OCA at 10:12, 14 June 2023

OCA — Wed, 14 Jun 2023 10:12:35 GMT

←Older revision		Revision as of 10:12, 14 June 2023
Line 1:		Line 1:

	==Solid-state MAS NMR structure of Acinetobacter phage 205 (AP205) coat protein in assembled capsid particles==		==Solid-state MAS NMR structure of Acinetobacter phage 205 (AP205) coat protein in assembled capsid particles==
-	<StructureSection load='5jzr' size='340' side='right'caption='[[5jzr~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='5jzr' size='340' side='right'caption='[[5jzr]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jzr]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Acinetobacter_phage_ap205~~ Acinetobacter phage ~~ap205~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JZR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5JZR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jzr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_phage_AP205 Acinetobacter phage AP205]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JZR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JZR FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5jzr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jzr OCA], [~~http~~://pdbe.org/5jzr PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5jzr RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5jzr PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5jzr ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jzr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jzr OCA], [https://pdbe.org/5jzr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jzr RCSB], [https://www.ebi.ac.uk/pdbsum/5jzr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jzr ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9AZ42_9VIRU Q9AZ42_9VIRU]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 19:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Acinetobacter phage ~~ap205~~]]	+	[[Category: Acinetobacter phage AP205]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Akopjana, I]]	+	[[Category: Akopjana I]]
-	[[Category: Andreas~~, L B~~]]	+	[[Category: Andreas LB]]
-	[[Category: Bertarello, A]]	+	[[Category: Bertarello A]]
-	[[Category: Emsley, L]]	+	[[Category: Cala-De Paepe D]]
-	[[Category: Engelke, F]]	+	[[Category: Emsley L]]
-	[[Category: Herrmann, T]]	+	[[Category: Engelke F]]
-	[[Category: Jaudzems, K]]	+	[[Category: Herrmann T]]
-	[[Category: Knott, B]]	+	[[Category: Jaudzems K]]
-	[[Category: Kotelovica, S]]	+	[[Category: Knott B]]
-	[[Category: Lalli, D]]	+	[[Category: Kotelovica S]]
-	[[Category: ~~Lesage, A]]~~	+	[[Category: Lalli D]]
-	~~[[Category:~~ Marchand, T Le]]	+	[[Category: Le Marchand T]]
-	[[Category: ~~Paepe, D Cala-De~~]]	+	[[Category: Lesage A]]
-	[[Category: Pintacuda, G]]	+	[[Category: Pintacuda G]]
-	[[Category: Stanek, J]]	+	[[Category: Stanek J]]
-	[[Category: Tars, K]]	+	[[Category: Tars K]]
-	[[Category: Wegner, S]]	+	[[Category: Wegner S]]
-	~~[[Category: Coat protein]]~~	+
-	~~[[Category: Viral protein~~]]	+

OCA at 06:21, 21 August 2019

OCA — Wed, 21 Aug 2019 06:21:43 GMT

←Older revision		Revision as of 06:21, 21 August 2019
Line 1:		Line 1:

	==Solid-state MAS NMR structure of Acinetobacter phage 205 (AP205) coat protein in assembled capsid particles==		==Solid-state MAS NMR structure of Acinetobacter phage 205 (AP205) coat protein in assembled capsid particles==
-	<StructureSection load='5jzr' size='340' side='right' caption='[[5jzr]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='5jzr' size='340' side='right'caption='[[5jzr]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5jzr]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_phage_ap205 Acinetobacter phage ap205]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JZR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JZR FirstGlance]. <br>		<table><tr><td colspan='2'>[[5jzr]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_phage_ap205 Acinetobacter phage ap205]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JZR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JZR FirstGlance]. <br>
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Acinetobacter phage ap205]]		[[Category: Acinetobacter phage ap205]]
		+	[[Category: Large Structures]]
	[[Category: Akopjana, I]]		[[Category: Akopjana, I]]
	[[Category: Andreas, L B]]		[[Category: Andreas, L B]]

OCA at 06:38, 7 February 2018

OCA — Wed, 07 Feb 2018 06:38:48 GMT

←Older revision		Revision as of 06:38, 7 February 2018
Line 3:		Line 3:
	<StructureSection load='5jzr' size='340' side='right' caption='[[5jzr]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='5jzr' size='340' side='right' caption='[[5jzr]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jzr]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JZR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JZR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jzr]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_phage_ap205 Acinetobacter phage ap205]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JZR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JZR FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jzr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jzr OCA], [http://pdbe.org/5jzr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jzr RCSB], [http://www.ebi.ac.uk/pdbsum/5jzr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jzr ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jzr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jzr OCA], [http://pdbe.org/5jzr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jzr RCSB], [http://www.ebi.ac.uk/pdbsum/5jzr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jzr ProSAT]</span></td></tr>
	</table>		</table>
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Acinetobacter phage ap205]]
	[[Category: Akopjana, I]]		[[Category: Akopjana, I]]
	[[Category: Andreas, L B]]		[[Category: Andreas, L B]]

OCA at 05:42, 9 September 2016

OCA — Fri, 09 Sep 2016 05:42:39 GMT

←Older revision		Revision as of 05:42, 9 September 2016
Line 6:		Line 6:
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jzr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jzr OCA], [http://pdbe.org/5jzr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jzr RCSB], [http://www.ebi.ac.uk/pdbsum/5jzr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jzr ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jzr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jzr OCA], [http://pdbe.org/5jzr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jzr RCSB], [http://www.ebi.ac.uk/pdbsum/5jzr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jzr ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Protein structure determination by proton-detected magic-angle spinning (MAS) NMR has focused on highly deuterated samples, in which only a small number of protons are introduced and observation of signals from side chains is extremely limited. Here, we show in two fully protonated proteins that, at 100-kHz MAS and above, spectral resolution is high enough to detect resolved correlations from amide and side-chain protons of all residue types, and to reliably measure a dense network of (1)H-(1)H proximities that define a protein structure. The high data quality allowed the correct identification of internuclear distance restraints encoded in 3D spectra with automated data analysis, resulting in accurate, unbiased, and fast structure determination. Additionally, we find that narrower proton resonance lines, longer coherence lifetimes, and improved magnetization transfer offset the reduced sample size at 100-kHz spinning and above. Less than 2 weeks of experiment time and a single 0.5-mg sample was sufficient for the acquisition of all data necessary for backbone and side-chain resonance assignment and unsupervised structure determination. We expect the technique to pave the way for atomic-resolution structure analysis applicable to a wide range of proteins.
		+
		+	Structure of fully protonated proteins by proton-detected magic-angle spinning NMR.,Andreas LB, Jaudzems K, Stanek J, Lalli D, Bertarello A, Le Marchand T, Cala-De Paepe D, Kotelovica S, Akopjana I, Knott B, Wegner S, Engelke F, Lesage A, Emsley L, Tars K, Herrmann T, Pintacuda G Proc Natl Acad Sci U S A. 2016 Aug 16;113(33):9187-92. doi:, 10.1073/pnas.1602248113. Epub 2016 Aug 3. PMID:27489348<ref>PMID:27489348</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5jzr" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 16:28, 10 August 2016

OCA — Wed, 10 Aug 2016 16:28:24 GMT

←Older revision		Revision as of 16:28, 10 August 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5jzr ~~is ON HOLD~~	+	==Solid-state MAS NMR structure of Acinetobacter phage 205 (AP205) coat protein in assembled capsid particles==
-		+	<StructureSection load='5jzr' size='340' side='right' caption='[[5jzr]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
-	~~Authors~~: ~~Jaudzems, K~~.~~, Andreas, L~~.B.~~, Stanek, J~~.~~, Lalli, D~~.~~, Bertarello, A~~.~~, Le Marchand, T~~.~~, Cala~~-~~De Paepe, D~~.~~, Kotelovica, S~~.~~, Akopjana, I~~.~~, Knott, B~~.~~, Wegner, S~~., ~~Engelke, F~~., ~~Lesage, A~~., ~~Emsley, L~~., ~~Tars, K~~., ~~Herrmann, T~~., ~~Pintacuda~~, G.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5jzr]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JZR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JZR FirstGlance]. <br>
-	~~Description~~: ~~Solid-state MAS NMR structure of Acinetobacter phage 205 (AP205) coat protein in assembled capsid particles~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jzr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jzr OCA], [http://pdbe.org/5jzr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jzr RCSB], [http://www.ebi.ac.uk/pdbsum/5jzr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jzr ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Akopjana, I]]
		+	[[Category: Andreas, L B]]
		+	[[Category: Bertarello, A]]
		+	[[Category: Emsley, L]]
		+	[[Category: Engelke, F]]
	[[Category: Herrmann, T]]		[[Category: Herrmann, T]]
-	[[Category: ~~Le Marchand~~, T]]	+	[[Category: Jaudzems, K]]
-	[[Category: ~~Bertarello~~, A]]	+	[[Category: Knott, B]]
-	[[Category: ~~Wegner~~, S]]	+	[[Category: Kotelovica, S]]
	[[Category: Lalli, D]]		[[Category: Lalli, D]]
-	[[Category: Jaudzems, K]]
-	[[Category: Tars, K]]
-	[[Category: Engelke, F]]
	[[Category: Lesage, A]]		[[Category: Lesage, A]]
		+	[[Category: Marchand, T Le]]
		+	[[Category: Paepe, D Cala-De]]
		+	[[Category: Pintacuda, G]]
	[[Category: Stanek, J]]		[[Category: Stanek, J]]
-	[[Category: ~~Emsley~~, L]]	+	[[Category: Tars, K]]
-	[[Category: ~~Akopjana, I]]~~	+	[[Category: Wegner, S]]
-	~~[[Category: Andreas, L.B]]~~	+	[[Category: Coat protein]]
-	~~[[Category: Cala-De Paepe, D]]~~	+	[[Category: Viral protein]]
-	~~[[Category: Kotelovica~~, S]]	+
-	[[Category: ~~Pintacuda, G~~]]	+
-	[[Category: ~~Knott, B~~]]	+

OCA: Protected "5jzr" [edit=sysop:move=sysop]

OCA — Wed, 01 Jun 2016 14:06:46 GMT

Protected "5jzr" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:06, 1 June 2016

OCA: New page: '''Unreleased structure''' The entry 5jzr is ON HOLD Authors: Jaudzems, K., Andreas, L.B., Stanek, J., Lalli, D., Bertarello, A., Le Marchand, T., Cala-De Paepe, D., Kotelovica, S., Ako...

OCA — Wed, 01 Jun 2016 14:06:45 GMT

New page: '''Unreleased structure''' The entry 5jzr is ON HOLD Authors: Jaudzems, K., Andreas, L.B., Stanek, J., Lalli, D., Bertarello, A., Le Marchand, T., Cala-De Paepe, D., Kotelovica, S., Ako...

New page

'''Unreleased structure'''

The entry 5jzr is ON HOLD

Authors: Jaudzems, K., Andreas, L.B., Stanek, J., Lalli, D., Bertarello, A., Le Marchand, T., Cala-De Paepe, D., Kotelovica, S., Akopjana, I., Knott, B., Wegner, S., Engelke, F., Lesage, A., Emsley, L., Tars, K., Herrmann, T., Pintacuda, G.

Description: Solid-state MAS NMR structure of Acinetobacter phage 205 (AP205) coat protein in assembled capsid particles
[[Category: Unreleased Structures]]
[[Category: Herrmann, T]]
[[Category: Le Marchand, T]]
[[Category: Bertarello, A]]
[[Category: Wegner, S]]
[[Category: Lalli, D]]
[[Category: Jaudzems, K]]
[[Category: Tars, K]]
[[Category: Engelke, F]]
[[Category: Lesage, A]]
[[Category: Stanek, J]]
[[Category: Emsley, L]]
[[Category: Akopjana, I]]
[[Category: Andreas, L.B]]
[[Category: Cala-De Paepe, D]]
[[Category: Kotelovica, S]]
[[Category: Pintacuda, G]]
[[Category: Knott, B]]