5jzv - Revision history

OCA at 19:16, 20 September 2023

OCA — Wed, 20 Sep 2023 19:16:33 GMT

←Older revision		Revision as of 19:16, 20 September 2023
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	==The structure of D77G hCINAP-ADP==		==The structure of D77G hCINAP-ADP==
-	<StructureSection load='5jzv' size='340' side='right' caption='[[5jzv]], [[Resolution\|resolution]] 2.07Å' scene=''>	+	<StructureSection load='5jzv' size='340' side='right'caption='[[5jzv]], [[Resolution\|resolution]] 2.07Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jzv]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JZV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5JZV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jzv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JZV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JZV FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.07Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">AK6, CINAP, AD-004, CGI-137 ([http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=9606 HUMAN])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[http://en.wikipedia.org/wiki/Adenylate_kinase Adenylate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.3 2.7.4.3]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jzv OCA], [https://pdbe.org/5jzv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jzv RCSB], [https://www.ebi.ac.uk/pdbsum/5jzv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jzv ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5jzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jzv OCA], [~~http~~://pdbe.org/5jzv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5jzv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5jzv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5jzv ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/KAD6_HUMAN KAD6_HUMAN]] Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. AMP and dAMP are the preferred substrates, but CMP and dCMP are also good substrates. IMP is phosphorylated to a much lesser extent. All nucleoside triphosphates ATP, GTP, UTP, CTP, dATP, dCTP, dGTP, and TTP are accepted as phosphate donors. CTP is the best phosphate donor, followed by UTP, ATP, GTP and dCTP. May have a role in nuclear energy homeostasis. Has also ATPase activity. May be involved in regulation of Cajal body (CB) formation.<ref>PMID:15630091</ref>	+	[https://www.uniprot.org/uniprot/KAD6_HUMAN KAD6_HUMAN] Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. AMP and dAMP are the preferred substrates, but CMP and dCMP are also good substrates. IMP is phosphorylated to a much lesser extent. All nucleoside triphosphates ATP, GTP, UTP, CTP, dATP, dCTP, dGTP, and TTP are accepted as phosphate donors. CTP is the best phosphate donor, followed by UTP, ATP, GTP and dCTP. May have a role in nuclear energy homeostasis. Has also ATPase activity. May be involved in regulation of Cajal body (CB) formation.<ref>PMID:15630091</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 5jzv" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5jzv" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Adenylate kinase 3D structures\|Adenylate kinase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Adenylate kinase~~]]	+	[[Category: Homo sapiens]]
-	[[Category: ~~Human~~]]	+	[[Category: Large Structures]]
-	[[Category: Cai, X]]	+	[[Category: Cai X]]
-	[[Category: Liu, Y]]	+	[[Category: Liu Y]]
-	[[Category: Yang, Y]]	+	[[Category: Yang Y]]
-	[[Category: Yang, Z]]	+	[[Category: Yang Z]]
-	[[Category: Zheng, X]]	+	[[Category: Zheng X]]
-	~~[[Category: Atpase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 07:37, 6 December 2017

OCA — Wed, 06 Dec 2017 07:37:53 GMT

←Older revision		Revision as of 07:37, 6 December 2017
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	<StructureSection load='5jzv' size='340' side='right' caption='[[5jzv]], [[Resolution\|resolution]] 2.07Å' scene=''>		<StructureSection load='5jzv' size='340' side='right' caption='[[5jzv]], [[Resolution\|resolution]] 2.07Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jzv]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JZV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JZV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jzv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JZV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JZV FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AK6, CINAP, AD-004, CGI-137 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenylate_kinase Adenylate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.3 2.7.4.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenylate_kinase Adenylate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.3 2.7.4.3] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jzv OCA], [http://pdbe.org/5jzv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jzv RCSB], [http://www.ebi.ac.uk/pdbsum/5jzv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jzv ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jzv OCA], [http://pdbe.org/5jzv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jzv RCSB], [http://www.ebi.ac.uk/pdbsum/5jzv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jzv ProSAT]</span></td></tr>
Line 10:		Line 11:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/KAD6_HUMAN KAD6_HUMAN]] Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. AMP and dAMP are the preferred substrates, but CMP and dCMP are also good substrates. IMP is phosphorylated to a much lesser extent. All nucleoside triphosphates ATP, GTP, UTP, CTP, dATP, dCTP, dGTP, and TTP are accepted as phosphate donors. CTP is the best phosphate donor, followed by UTP, ATP, GTP and dCTP. May have a role in nuclear energy homeostasis. Has also ATPase activity. May be involved in regulation of Cajal body (CB) formation.<ref>PMID:15630091</ref>		[[http://www.uniprot.org/uniprot/KAD6_HUMAN KAD6_HUMAN]] Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. AMP and dAMP are the preferred substrates, but CMP and dCMP are also good substrates. IMP is phosphorylated to a much lesser extent. All nucleoside triphosphates ATP, GTP, UTP, CTP, dATP, dCTP, dGTP, and TTP are accepted as phosphate donors. CTP is the best phosphate donor, followed by UTP, ATP, GTP and dCTP. May have a role in nuclear energy homeostasis. Has also ATPase activity. May be involved in regulation of Cajal body (CB) formation.<ref>PMID:15630091</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Dysfunctions in ribosome biogenesis cause developmental defects and increased cancer susceptibility; however, the connection between ribosome assembly and tumorigenesis remains unestablished. Here we show that hCINAP (also named AK6) is required for human 18S rRNA processing and 40S subunit assembly. Homozygous CINAP(-/-) mice show embryonic lethality. The heterozygotes are viable and show defects in 18S rRNA processing, whereas no delayed cell growth is observed. However, during rapid growth, CINAP haploinsufficiency impairs protein synthesis. Consistently, hCINAP depletion in fast-growing cancer cells inhibits ribosome assembly and abolishes tumorigenesis. These data demonstrate that hCINAP reduction is a specific rate-limiting controller during rapid growth. Notably, hCINAP is highly expressed in cancers and correlated with a worse prognosis. Genome-wide polysome profiling shows that hCINAP selectively modulates cancer-associated translatome to promote malignancy. Our results connect the role of hCINAP in ribosome assembly with tumorigenesis. Modulation of hCINAP expression may be a promising target for cancer therapy.
		+
		+	The ATPase hCINAP regulates 18S rRNA processing and is essential for embryogenesis and tumour growth.,Bai D, Zhang J, Li T, Hang R, Liu Y, Tian Y, Huang D, Qu L, Cao X, Ji J, Zheng X Nat Commun. 2016 Aug 1;7:12310. doi: 10.1038/ncomms12310. PMID:27477389<ref>PMID:27477389</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5jzv" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
Line 15:		Line 25:
	</StructureSection>		</StructureSection>
	[[Category: Adenylate kinase]]		[[Category: Adenylate kinase]]
		+	[[Category: Human]]
	[[Category: Cai, X]]		[[Category: Cai, X]]
	[[Category: Liu, Y]]		[[Category: Liu, Y]]

OCA at 16:28, 10 August 2016

OCA — Wed, 10 Aug 2016 16:28:30 GMT

←Older revision		Revision as of 16:28, 10 August 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	The ~~entry~~ 5jzv is ~~ON HOLD until Paper Publication~~	+	==The structure of D77G hCINAP-ADP==
-		+	<StructureSection load='5jzv' size='340' side='right' caption='[[5jzv]], [[Resolution\|resolution]] 2.07Å' scene=''>
-	~~Authors~~: ~~Liu~~, Y., ~~Yang~~, Z., ~~Yang~~, Y., ~~Cai~~, X., ~~Zheng~~, X.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5jzv]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JZV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JZV FirstGlance]. <br>
-	~~Description~~: ~~The structure of D77G hCINAP-ADP~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenylate_kinase Adenylate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.3 2.7.4.3] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jzv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jzv OCA], [http://pdbe.org/5jzv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jzv RCSB], [http://www.ebi.ac.uk/pdbsum/5jzv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jzv ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/KAD6_HUMAN KAD6_HUMAN]] Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. AMP and dAMP are the preferred substrates, but CMP and dCMP are also good substrates. IMP is phosphorylated to a much lesser extent. All nucleoside triphosphates ATP, GTP, UTP, CTP, dATP, dCTP, dGTP, and TTP are accepted as phosphate donors. CTP is the best phosphate donor, followed by UTP, ATP, GTP and dCTP. May have a role in nuclear energy homeostasis. Has also ATPase activity. May be involved in regulation of Cajal body (CB) formation.<ref>PMID:15630091</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Adenylate kinase]]
		+	[[Category: Cai, X]]
		+	[[Category: Liu, Y]]
		+	[[Category: Yang, Y]]
	[[Category: Yang, Z]]		[[Category: Yang, Z]]
-	[[Category: Yang, Y]]
	[[Category: Zheng, X]]		[[Category: Zheng, X]]
-	[[Category: ~~Liu, Y~~]]	+	[[Category: Atpase]]
-	[[Category: ~~Cai, X~~]]	+	[[Category: Transferase]]

OCA at 13:17, 20 June 2016

OCA — Mon, 20 Jun 2016 13:17:52 GMT

←Older revision		Revision as of 13:17, 20 June 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5jzv is ON HOLD	+	The entry 5jzv is ON HOLD until Paper Publication

	Authors: Liu, Y., Yang, Z., Yang, Y., Cai, X., Zheng, X.		Authors: Liu, Y., Yang, Z., Yang, Y., Cai, X., Zheng, X.

OCA: Protected "5jzv" [edit=sysop:move=sysop]

OCA — Wed, 01 Jun 2016 14:07:02 GMT

Protected "5jzv" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:07, 1 June 2016

OCA: New page: '''Unreleased structure''' The entry 5jzv is ON HOLD Authors: Liu, Y., Yang, Z., Yang, Y., Cai, X., Zheng, X. Description: The structure of D77G hCINAP-ADP [[Category: Unreleased Struc...

OCA — Wed, 01 Jun 2016 14:07:00 GMT

New page: '''Unreleased structure''' The entry 5jzv is ON HOLD Authors: Liu, Y., Yang, Z., Yang, Y., Cai, X., Zheng, X. Description: The structure of D77G hCINAP-ADP [[Category: Unreleased Struc...

New page

'''Unreleased structure'''

The entry 5jzv is ON HOLD

Authors: Liu, Y., Yang, Z., Yang, Y., Cai, X., Zheng, X.

Description: The structure of D77G hCINAP-ADP
[[Category: Unreleased Structures]]
[[Category: Yang, Z]]
[[Category: Yang, Y]]
[[Category: Zheng, X]]
[[Category: Liu, Y]]
[[Category: Cai, X]]