5k7s - Revision history

OCA at 10:42, 27 September 2023

OCA — Wed, 27 Sep 2023 10:42:48 GMT

←Older revision		Revision as of 10:42, 27 September 2023
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	<StructureSection load='5k7s' size='340' side='right'caption='[[5k7s]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='5k7s' size='340' side='right'caption='[[5k7s]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5k7s]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Engyodontium_album Engyodontium~~ album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K7S OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5K7S FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5k7s]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Parengyodontium_album Parengyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K7S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5K7S FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron crystallography, [[Resolution\|Resolution]] 1.6Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~>[[5k7n\|5k7n]], [[5k7o\|5k7o]], [[5k7p\|5k7p]], [[5k7q\|5k7q]], [[5k7r\|5k7r]], [[5k7t\|5k7t]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	~~<tr~~ id~~='activity'><td class~~="~~sblockLbl~~"><~~b>Activity:</b></td><td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/Peptidase_K Peptidase K], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.64 3.4.21.64]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5k7s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k7s OCA], [https://pdbe.org/5k7s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5k7s RCSB], [https://www.ebi.ac.uk/pdbsum/5k7s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5k7s ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5k7s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k7s OCA], [~~http~~://pdbe.org/5k7s PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5k7s RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5k7s PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5k7s ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~PRTK_ENGAL PRTK_ENGAL]~~] Hydrolyzes keratin at aromatic and hydrophobic residues.	+	[https://www.uniprot.org/uniprot/PRTK_PARAQ PRTK_PARAQ] Hydrolyzes keratin at aromatic and hydrophobic residues.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Engyodontium album]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Peptidase K~~]]	+	[[Category: Parengyodontium album]]
-	[[Category: Cascio, D]]	+	[[Category: Cascio D]]
-	~~[[Category: Cruz, M J.de la~~]]	+	[[Category: Eisenberg D]]
-	[[Category: Eisenberg, D]]	+	[[Category: Gonen T]]
-	[[Category: Gonen, T]]	+	[[Category: Hattne J]]
-	[[Category: Hattne, J]]	+	[[Category: Reyes FE]]
-	[[Category: Reyes~~, F E~~]]	+	[[Category: Rodriguez J]]
-	[[Category: Rodriguez, J]]	+	[[Category: Sawaya MR]]
-	[[Category: Sawaya~~, M R~~]]	+	[[Category: Seidler P]]
-	[[Category: Seidler, P]]	+	[[Category: Shi D]]
-	[[Category: Shi, D]]	+	[[Category: De la Cruz MJ]]
-	[[Category: ~~Hydrolase~~]]	+

OCA at 09:25, 1 July 2020

OCA — Wed, 01 Jul 2020 09:25:20 GMT

←Older revision		Revision as of 09:25, 1 July 2020
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	==MicroED structure of proteinase K at 1.6 A resolution==		==MicroED structure of proteinase K at 1.6 A resolution==
-	<StructureSection load='5k7s' size='340' side='right' caption='[[5k7s]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='5k7s' size='340' side='right'caption='[[5k7s]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5k7s]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Engyodontium_album Engyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K7S OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5K7S FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5k7s]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Engyodontium_album Engyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K7S OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5K7S FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5k7n\|5k7n]], [[5k7o\|5k7o]], [[5k7p\|5k7p]], [[5k7q\|5k7q]], [[5k7r\|5k7r]], [[5k7t\|5k7t]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5k7n\|5k7n]], [[5k7o\|5k7o]], [[5k7p\|5k7p]], [[5k7q\|5k7q]], [[5k7r\|5k7r]], [[5k7t\|5k7t]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidase_K Peptidase K], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.64 3.4.21.64] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidase_K Peptidase K], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.64 3.4.21.64] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5k7s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k7s OCA], [http://pdbe.org/5k7s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5k7s RCSB], [http://www.ebi.ac.uk/pdbsum/5k7s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5k7s ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5k7s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k7s OCA], [http://pdbe.org/5k7s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5k7s RCSB], [http://www.ebi.ac.uk/pdbsum/5k7s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5k7s ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	</StructureSection>		</StructureSection>
	[[Category: Engyodontium album]]		[[Category: Engyodontium album]]
		+	[[Category: Large Structures]]
	[[Category: Peptidase K]]		[[Category: Peptidase K]]
	[[Category: Cascio, D]]		[[Category: Cascio, D]]

OCA at 13:22, 5 April 2017

OCA — Wed, 05 Apr 2017 13:22:47 GMT

←Older revision		Revision as of 13:22, 5 April 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5k7s is ~~ON HOLD until Paper~~ Publication	+	==MicroED structure of proteinase K at 1.6 A resolution==
		+	<StructureSection load='5k7s' size='340' side='right' caption='[[5k7s]], [[Resolution\|resolution]] 1.60Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5k7s]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Engyodontium_album Engyodontium album]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K7S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5K7S FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5k7n\|5k7n]], [[5k7o\|5k7o]], [[5k7p\|5k7p]], [[5k7q\|5k7q]], [[5k7r\|5k7r]], [[5k7t\|5k7t]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidase_K Peptidase K], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.64 3.4.21.64] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5k7s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k7s OCA], [http://pdbe.org/5k7s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5k7s RCSB], [http://www.ebi.ac.uk/pdbsum/5k7s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5k7s ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PRTK_ENGAL PRTK_ENGAL]] Hydrolyzes keratin at aromatic and hydrophobic residues.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Traditionally, crystallographic analysis of macromolecules has depended on large, well-ordered crystals, which often require significant effort to obtain. Even sizable crystals sometimes suffer from pathologies that render them inappropriate for high-resolution structure determination. Here we show that fragmentation of large, imperfect crystals into microcrystals or nanocrystals can provide a simple path for high-resolution structure determination by the cryoEM method MicroED and potentially by serial femtosecond crystallography.

-	~~Authors~~:	+	Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED.,de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Weiss SC, Kim SK, Hinck CS, Hinck AP, Calero G, Eisenberg D, Gonen T Nat Methods. 2017 Feb 13;14(4):399-402. doi: 10.1038/nmeth.4178. PMID:28192420<ref>PMID:28192420</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5k7s" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Engyodontium album]]
		+	[[Category: Peptidase K]]
		+	[[Category: Cascio, D]]
		+	[[Category: Cruz, M J.de la]]
		+	[[Category: Eisenberg, D]]
		+	[[Category: Gonen, T]]
		+	[[Category: Hattne, J]]
		+	[[Category: Reyes, F E]]
		+	[[Category: Rodriguez, J]]
		+	[[Category: Sawaya, M R]]
		+	[[Category: Seidler, P]]
		+	[[Category: Shi, D]]
		+	[[Category: Hydrolase]]

OCA at 21:11, 23 June 2016

OCA — Thu, 23 Jun 2016 21:11:40 GMT

←Older revision		Revision as of 21:11, 23 June 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5k7s is ON HOLD	+	The entry 5k7s is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5k7s" [edit=sysop:move=sysop]

OCA — Wed, 01 Jun 2016 14:26:13 GMT

Protected "5k7s" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:26, 1 June 2016

OCA: New page: '''Unreleased structure''' The entry 5k7s is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 01 Jun 2016 14:26:12 GMT

New page: '''Unreleased structure''' The entry 5k7s is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5k7s is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]