5kee - Revision history

OCA at 09:59, 27 September 2023

OCA — Wed, 27 Sep 2023 09:59:15 GMT

←Older revision		Revision as of 09:59, 27 September 2023
Line 3:		Line 3:
	<StructureSection load='5kee' size='340' side='right'caption='[[5kee]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='5kee' size='340' side='right'caption='[[5kee]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5kee]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus~~ aureus~~" (rosenbach 1884) zopf 1885~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KEE OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5KEE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5kee]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KEE FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.5Å</td></tr>
-	~~<tr~~ id~~='related'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Related_structure~~\|~~Related:]]</b></td><td class="sblockDat">[[3bdc\|3bdc~~]]</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1280~~ "~~Micrococcus aureus~~" ~~(Rosenbach 1884) Zopf 1885])</td~~><~~/tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5kee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kee OCA], [https://pdbe.org/5kee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5kee RCSB], [https://www.ebi.ac.uk/pdbsum/5kee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5kee ProSAT]</span></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks'>[http~~:~~//en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease]~~, ~~with EC number [http://www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1]~~ </~~span~~></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5kee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kee OCA], [~~http~~://pdbe.org/5kee PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5kee RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5kee PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5kee ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.	+	[https://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.

	==See Also==		==See Also==
-	*[[Staphylococcal nuclease\|Staphylococcal nuclease]]	+	*[[Staphylococcal nuclease 3D structures\|Staphylococcal nuclease 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Micrococcal nuclease~~]]	+	[[Category: Staphylococcus aureus]]
-	[[Category: Caro~~, J A~~]]	+	[[Category: Caro JA]]
-	[[Category: ~~E., B~~ Garcia-Moreno]]	+	[[Category: Garcia-Moreno E B]]
-	[[Category: Heroux, A]]	+	[[Category: Heroux A]]
-	[[Category: Schlessman~~, J L~~]]	+	[[Category: Schlessman JL]]
-	[[Category: Skerritt~~, L A]]~~	+	[[Category: Skerritt LA]]
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Hyperstable variant]]~~	+
-	~~[[Category: Pdtp]]~~	+
-	~~[[Category: Staphylococcal nuclease~~]]	+

OCA at 07:43, 27 November 2019

OCA — Wed, 27 Nov 2019 07:43:47 GMT

←Older revision		Revision as of 07:43, 27 November 2019
Line 1:		Line 1:

	==Crystal structure of Staphylococcal nuclease variant Delta+PHS L25K/I92F at cryogenic temperature==		==Crystal structure of Staphylococcal nuclease variant Delta+PHS L25K/I92F at cryogenic temperature==
-	<StructureSection load='5kee' size='340' side='right' caption='[[5kee]], [[Resolution\|resolution]] 1.50Å' scene=''>	+	<StructureSection load='5kee' size='340' side='right'caption='[[5kee]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5kee]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KEE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KEE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5kee]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KEE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KEE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bdc\|3bdc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bdc\|3bdc]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kee OCA], [http://pdbe.org/5kee PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kee RCSB], [http://www.ebi.ac.uk/pdbsum/5kee PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kee ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kee OCA], [http://pdbe.org/5kee PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kee RCSB], [http://www.ebi.ac.uk/pdbsum/5kee PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kee ProSAT]</span></td></tr>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Micrococcal nuclease]]		[[Category: Micrococcal nuclease]]
	[[Category: Caro, J A]]		[[Category: Caro, J A]]

OCA at 07:30, 6 October 2017

OCA — Fri, 06 Oct 2017 07:30:11 GMT

←Older revision		Revision as of 07:30, 6 October 2017
Line 11:		Line 11:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.		[[http://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.
		+
		+	==See Also==
		+	*[[Staphylococcal nuclease\|Staphylococcal nuclease]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 02:29, 13 July 2016

OCA — Wed, 13 Jul 2016 02:29:08 GMT

←Older revision		Revision as of 02:29, 13 July 2016
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	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bdc\|3bdc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bdc\|3bdc]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kee OCA], [http://pdbe.org/5kee PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kee RCSB], [http://www.ebi.ac.uk/pdbsum/5kee PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kee OCA], [http://pdbe.org/5kee PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kee RCSB], [http://www.ebi.ac.uk/pdbsum/5kee PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kee ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 23:30, 23 June 2016

OCA — Thu, 23 Jun 2016 23:30:16 GMT

←Older revision		Revision as of 23:30, 23 June 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5kee ~~is ON HOLD~~	+	==Crystal structure of Staphylococcal nuclease variant Delta+PHS L25K/I92F at cryogenic temperature==
-		+	<StructureSection load='5kee' size='340' side='right' caption='[[5kee]], [[Resolution\|resolution]] 1.50Å' scene=''>
-	~~Authors~~: ~~Skerritt, L~~.A.~~, Caro, J~~.A.~~, Heroux, A~~.~~, Schlessman, J~~.L.~~, Garcia~~-~~Moreno E~~.~~, B~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5kee]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KEE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KEE FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure of Staphylcoccal nuclease variant Delta~~+~~PHS L25K~~/~~I92F at cryogenic temperature~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bdc\|3bdc]]</td></tr>
-	[[~~Category~~: ~~Caro~~, J.A]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
-	[[~~Category~~: ~~Skerritt, L~~.A]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kee OCA], [http://pdbe.org/5kee PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kee RCSB], [http://www.ebi.ac.uk/pdbsum/5kee PDBsum]</span></td></tr>
-	[[Category: ~~Schlessman, J.L~~]]	+	</table>
-	[[Category: ~~Garcia-Moreno E~~]]	+	== Function ==
-	[[Category: B]]	+	[[http://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Micrococcal nuclease]]
		+	[[Category: Caro, J A]]
		+	[[Category: E., B Garcia-Moreno]]
	[[Category: Heroux, A]]		[[Category: Heroux, A]]
		+	[[Category: Schlessman, J L]]
		+	[[Category: Skerritt, L A]]
		+	[[Category: Hydrolase]]
		+	[[Category: Hyperstable variant]]
		+	[[Category: Pdtp]]
		+	[[Category: Staphylococcal nuclease]]

OCA: Protected "5kee" [edit=sysop:move=sysop]

OCA — Mon, 20 Jun 2016 13:49:49 GMT

Protected "5kee" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:49, 20 June 2016

OCA: New page: '''Unreleased structure''' The entry 5kee is ON HOLD Authors: Skerritt, L.A., Caro, J.A., Heroux, A., Schlessman, J.L., Garcia-Moreno E., B. Description: Crystal structure of Staphylco...

OCA — Mon, 20 Jun 2016 13:49:47 GMT

New page: '''Unreleased structure''' The entry 5kee is ON HOLD Authors: Skerritt, L.A., Caro, J.A., Heroux, A., Schlessman, J.L., Garcia-Moreno E., B. Description: Crystal structure of Staphylco...

New page

'''Unreleased structure'''

The entry 5kee is ON HOLD

Authors: Skerritt, L.A., Caro, J.A., Heroux, A., Schlessman, J.L., Garcia-Moreno E., B.

Description: Crystal structure of Staphylcoccal nuclease variant Delta+PHS L25K/I92F at cryogenic temperature
[[Category: Unreleased Structures]]
[[Category: Caro, J.A]]
[[Category: Skerritt, L.A]]
[[Category: Schlessman, J.L]]
[[Category: Garcia-Moreno E]]
[[Category: B]]
[[Category: Heroux, A]]