5kgu - Revision history

OCA at 10:00, 27 September 2023

OCA — Wed, 27 Sep 2023 10:00:47 GMT

←Older revision		Revision as of 10:00, 27 September 2023
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	<StructureSection load='5kgu' size='340' side='right'caption='[[5kgu]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='5kgu' size='340' side='right'caption='[[5kgu]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5kgu]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus~~ aureus~~" (rosenbach 1884) zopf 1885~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KGU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5KGU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5kgu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KGU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KGU FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
-	~~<tr~~ id~~='related'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Related_structure~~\|~~Related:]]</b></td><td class="sblockDat">[[3bdc\|3bdc~~]]</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1280~~ "~~Micrococcus aureus~~" ~~(Rosenbach 1884) Zopf 1885])</td~~><~~/tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5kgu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kgu OCA], [https://pdbe.org/5kgu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5kgu RCSB], [https://www.ebi.ac.uk/pdbsum/5kgu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5kgu ProSAT]</span></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks'>[http~~:~~//en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease]~~, ~~with EC number [http://www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1]~~ </~~span~~></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5kgu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kgu OCA], [~~http~~://pdbe.org/5kgu PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5kgu RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5kgu PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5kgu ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.	+	[https://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.

	==See Also==		==See Also==
-	*[[Staphylococcal nuclease\|Staphylococcal nuclease]]	+	*[[Staphylococcal nuclease 3D structures\|Staphylococcal nuclease 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Micrococcal nuclease~~]]	+	[[Category: Staphylococcus aureus]]
-	[[Category: ~~E., B~~ Garcia-Moreno]]	+	[[Category: Garcia-Moreno E B]]
-	[[Category: Robinson~~, A C~~]]	+	[[Category: Robinson AC]]
-	[[Category: Schlessman~~, J L~~]]	+	[[Category: Schlessman JL]]
-	[[Category: Skerritt~~, L A]]~~	+	[[Category: Skerritt LA]]
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Hyperstable]]~~	+
-	~~[[Category: Ionizable group]]~~	+
-	~~[[Category: Nuclease]]~~	+
-	~~[[Category: Pdtp~~]]	+

OCA at 12:16, 25 December 2019

OCA — Wed, 25 Dec 2019 12:16:47 GMT

←Older revision		Revision as of 12:16, 25 December 2019
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	==Crystal structure of Staphylococcal nuclease variant Delta+PHS N118D at cryogenic temperature==		==Crystal structure of Staphylococcal nuclease variant Delta+PHS N118D at cryogenic temperature==
-	<StructureSection load='5kgu' size='340' side='right' caption='[[5kgu]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='5kgu' size='340' side='right'caption='[[5kgu]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5kgu]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KGU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KGU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5kgu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KGU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KGU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bdc\|3bdc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bdc\|3bdc]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nuc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kgu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kgu OCA], [http://pdbe.org/5kgu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kgu RCSB], [http://www.ebi.ac.uk/pdbsum/5kgu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kgu ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kgu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kgu OCA], [http://pdbe.org/5kgu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kgu RCSB], [http://www.ebi.ac.uk/pdbsum/5kgu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kgu ProSAT]</span></td></tr>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Micrococcal nuclease]]		[[Category: Micrococcal nuclease]]
	[[Category: E., B Garcia-Moreno]]		[[Category: E., B Garcia-Moreno]]

OCA at 07:31, 6 October 2017

OCA — Fri, 06 Oct 2017 07:31:18 GMT

←Older revision		Revision as of 07:31, 6 October 2017
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	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.		[[http://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.
		+
		+	==See Also==
		+	*[[Staphylococcal nuclease\|Staphylococcal nuclease]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 02:30, 13 July 2016

OCA — Wed, 13 Jul 2016 02:30:26 GMT

←Older revision		Revision as of 02:30, 13 July 2016
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	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bdc\|3bdc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3bdc\|3bdc]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kgu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kgu OCA], [http://pdbe.org/5kgu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kgu RCSB], [http://www.ebi.ac.uk/pdbsum/5kgu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kgu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kgu OCA], [http://pdbe.org/5kgu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kgu RCSB], [http://www.ebi.ac.uk/pdbsum/5kgu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kgu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA: Protected "5kgu" [edit=sysop:move=sysop]

OCA — Thu, 23 Jun 2016 23:31:37 GMT

Protected "5kgu" [edit=sysop:move=sysop]

←Older revision

Revision as of 23:31, 23 June 2016

OCA: New page: ==Crystal structure of Staphylococcal nuclease variant Delta+PHS N118D at cryogenic temperature== == Structural highlights ==
<table><tr><td colspan='2'>[[5kgu]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KGU OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KGU FirstGlance]. 
</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>
<tr id='related'><td class="sblockLbl">[[Related_structure|Related:]]</td><td class="sblockDat">[[3bdc|3bdc]]</td></tr>
<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/Micrococcal_nuclease Micrococcal nuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.31.1 3.1.31.1] </td></tr>
<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kgu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kgu OCA], [http://pdbe.org/5kgu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kgu RCSB], [http://www.ebi.ac.uk/pdbsum/5kgu PDBsum]</td></tr>
</table>
== Function ==
[[http://www.uniprot.org/uniprot/NUC_STAAU NUC_STAAU]] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond.
TOC
</StructureSection>
[[Category: Micrococcal nuclease]]
[[Category: E., B Garcia-Moreno]]
[[Category: Robinson, A C]]
[[Category: Schlessman, J L]]
[[Category: Skerritt, L A]]
[[Category: Hydrolase]]
[[Category: Hyperstable]]
[[Category: Ionizable group]]
[[Category: Nuclease]]
[[Category: Pdtp]]