5kqq - Revision history

OCA at 10:51, 27 September 2023

OCA — Wed, 27 Sep 2023 10:51:43 GMT

←Older revision		Revision as of 10:51, 27 September 2023
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	<StructureSection load='5kqq' size='340' side='right'caption='[[5kqq]], [[Resolution\|resolution]] 1.87Å' scene=''>		<StructureSection load='5kqq' size='340' side='right'caption='[[5kqq]], [[Resolution\|resolution]] 1.87Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5kqq]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Burp1 Burp1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KQQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5KQQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5kqq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_pseudomallei_1710b Burkholderia pseudomallei 1710b]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KQQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KQQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.87Å</td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=TOX:1-HYDROPEROXY-L-TRYPTOPHAN'>TOX</scene~~></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=TOX:1-HYDROPEROXY-L-TRYPTOPHAN'>TOX</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5kq0\|5kq0]], [[5kq2\|5kq2]], [[5kq3\|5kq3]], [[5kq6\|5kq6]], [[5kq7\|5kq7]], [[5kqh\|5kqh]], [[5kqi\|5kqi]], [[5kqk\|5kqk]], [[5kqn\|5kqn]]</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5kqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kqq OCA], [https://pdbe.org/5kqq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5kqq RCSB], [https://www.ebi.ac.uk/pdbsum/5kqq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5kqq ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">katG, BURPS1710b_3366 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=320372 BURP1])</td></tr>	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catalase_peroxidase Catalase peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.21 1.11.1.21] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5kqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kqq OCA], [~~http~~://pdbe.org/5kqq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5kqq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5kqq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5kqq ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/KATG_BURP1 KATG_BURP1]] Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity.	+	[https://www.uniprot.org/uniprot/KATG_BURP1 KATG_BURP1] Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity.

	==See Also==		==See Also==
Line 18:		Line 15:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Burp1]]~~	+	[[Category: Burkholderia pseudomallei 1710b]]
-	~~[[Category: Catalase peroxidase~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Loewen~~, P C]]~~	+	[[Category: Loewen PC]]
-	~~[[Category: Catalase]]~~	+
-	~~[[Category: Heme]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Peroxidase]]~~	+
-	~~[[Category: W153f~~]]	+

OCA at 08:10, 8 January 2020

OCA — Wed, 08 Jan 2020 08:10:48 GMT

←Older revision		Revision as of 08:10, 8 January 2020
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	==Crystal structure of the W153F variant of catalase-peroxidase from B. pseudomallei treated==		==Crystal structure of the W153F variant of catalase-peroxidase from B. pseudomallei treated==
-	<StructureSection load='5kqq' size='340' side='right' caption='[[5kqq]], [[Resolution\|resolution]] 1.87Å' scene=''>	+	<StructureSection load='5kqq' size='340' side='right'caption='[[5kqq]], [[Resolution\|resolution]] 1.87Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5kqq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burp1 Burp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KQQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[5kqq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burp1 Burp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KQQ FirstGlance]. <br>
Line 13:		Line 13:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/KATG_BURP1 KATG_BURP1]] Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity.		[[http://www.uniprot.org/uniprot/KATG_BURP1 KATG_BURP1]] Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity.
		+
		+	==See Also==
		+	*[[Catalase 3D structures\|Catalase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Burp1]]		[[Category: Burp1]]
	[[Category: Catalase peroxidase]]		[[Category: Catalase peroxidase]]
		+	[[Category: Large Structures]]
	[[Category: Loewen, P C]]		[[Category: Loewen, P C]]
	[[Category: Catalase]]		[[Category: Catalase]]

OCA at 13:02, 6 November 2017

OCA — Mon, 06 Nov 2017 13:02:38 GMT

←Older revision		Revision as of 13:02, 6 November 2017
Line 3:		Line 3:
	<StructureSection load='5kqq' size='340' side='right' caption='[[5kqq]], [[Resolution\|resolution]] 1.87Å' scene=''>		<StructureSection load='5kqq' size='340' side='right' caption='[[5kqq]], [[Resolution\|resolution]] 1.87Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5kqq]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KQQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5kqq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burp1 Burp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KQQ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=TOX:1-HYDROPEROXY-L-TRYPTOPHAN'>TOX</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=TOX:1-HYDROPEROXY-L-TRYPTOPHAN'>TOX</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5kq0\|5kq0]], [[5kq2\|5kq2]], [[5kq3\|5kq3]], [[5kq6\|5kq6]], [[5kq7\|5kq7]], [[5kqh\|5kqh]], [[5kqi\|5kqi]], [[5kqk\|5kqk]], [[5kqn\|5kqn]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5kq0\|5kq0]], [[5kq2\|5kq2]], [[5kq3\|5kq3]], [[5kq6\|5kq6]], [[5kq7\|5kq7]], [[5kqh\|5kqh]], [[5kqi\|5kqi]], [[5kqk\|5kqk]], [[5kqn\|5kqn]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">katG, BURPS1710b_3366 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=320372 BURP1])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catalase_peroxidase Catalase peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.21 1.11.1.21] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catalase_peroxidase Catalase peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.21 1.11.1.21] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kqq OCA], [http://pdbe.org/5kqq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kqq RCSB], [http://www.ebi.ac.uk/pdbsum/5kqq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kqq ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kqq OCA], [http://pdbe.org/5kqq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kqq RCSB], [http://www.ebi.ac.uk/pdbsum/5kqq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kqq ProSAT]</span></td></tr>
Line 14:		Line 15:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Burp1]]
	[[Category: Catalase peroxidase]]		[[Category: Catalase peroxidase]]
	[[Category: Loewen, P C]]		[[Category: Loewen, P C]]

OCA at 10:05, 10 September 2017

OCA — Sun, 10 Sep 2017 10:05:58 GMT

←Older revision		Revision as of 10:05, 10 September 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 5kqq is ON HOLD until Paper Publication~~	+	==Crystal structure of the W153F variant of catalase-peroxidase from B. pseudomallei treated==
-		+	<StructureSection load='5kqq' size='340' side='right' caption='[[5kqq]], [[Resolution\|resolution]] 1.87Å' scene=''>
-	~~Authors: Loewen, P.C.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5kqq]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KQQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KQQ FirstGlance]. <br>
-	~~Description:~~ Crystal structure of the W153F variant of catalase-peroxidase from B. pseudomallei treated	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=TOX:1-HYDROPEROXY-L-TRYPTOPHAN'>TOX</scene></td></tr>
-	[[Category: Loewen, P.C]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5kq0\|5kq0]], [[5kq2\|5kq2]], [[5kq3\|5kq3]], [[5kq6\|5kq6]], [[5kq7\|5kq7]], [[5kqh\|5kqh]], [[5kqi\|5kqi]], [[5kqk\|5kqk]], [[5kqn\|5kqn]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catalase_peroxidase Catalase peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.21 1.11.1.21] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kqq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kqq OCA], [http://pdbe.org/5kqq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kqq RCSB], [http://www.ebi.ac.uk/pdbsum/5kqq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kqq ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/KATG_BURP1 KATG_BURP1]] Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Catalase peroxidase]]
		+	[[Category: Loewen, P C]]
		+	[[Category: Catalase]]
		+	[[Category: Heme]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Peroxidase]]
		+	[[Category: W153f]]

OCA at 12:43, 26 July 2016

OCA — Tue, 26 Jul 2016 12:43:52 GMT

←Older revision		Revision as of 12:43, 26 July 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5kqq is ON HOLD	+	The entry 5kqq is ON HOLD until Paper Publication

	Authors: Loewen, P.C.		Authors: Loewen, P.C.

OCA: Protected "5kqq" [edit=sysop:move=sysop]

OCA — Thu, 14 Jul 2016 09:36:02 GMT

Protected "5kqq" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:36, 14 July 2016

OCA: New page: '''Unreleased structure''' The entry 5kqq is ON HOLD Authors: Loewen, P.C. Description: Crystal structure of the W153F variant of catalase-peroxidase from B. pseudomallei treated [[Cat...

OCA — Thu, 14 Jul 2016 09:36:00 GMT

New page: '''Unreleased structure''' The entry 5kqq is ON HOLD Authors: Loewen, P.C. Description: Crystal structure of the W153F variant of catalase-peroxidase from B. pseudomallei treated [[Cat...

New page

'''Unreleased structure'''

The entry 5kqq is ON HOLD

Authors: Loewen, P.C.

Description: Crystal structure of the W153F variant of catalase-peroxidase from B. pseudomallei treated
[[Category: Unreleased Structures]]
[[Category: Loewen, P.C]]