5ktf - Revision history

OCA at 10:13, 14 June 2023

OCA — Wed, 14 Jun 2023 10:13:54 GMT

←Older revision		Revision as of 10:13, 14 June 2023
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	==Structure of the C-terminal transmembrane domain of scavenger receptor BI (SR-BI)==		==Structure of the C-terminal transmembrane domain of scavenger receptor BI (SR-BI)==
-	<StructureSection load='5ktf' size='340' side='right'caption='[[5ktf~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='5ktf' size='340' side='right'caption='[[5ktf]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5ktf]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Lk3_transgenic_mice Lk3 transgenic mice~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KTF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5KTF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5ktf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KTF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KTF FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Scarb1, Srb1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ktf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ktf OCA], [https://pdbe.org/5ktf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ktf RCSB], [https://www.ebi.ac.uk/pdbsum/5ktf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ktf ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ktf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ktf OCA], [~~http~~://pdbe.org/5ktf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5ktf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5ktf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5ktf ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/SCRB1_MOUSE SCRB1_MOUSE]] Receptor for different ligands such as phospholipids, cholesterol ester, lipoproteins, phosphatidylserine and apoptotic cells. Probable receptor for HDL, located in particular region of the plasma membrane, called caveolae. Facilitates the flux of free and esterified cholesterol between the cell surface and extracellular donors and acceptors, such as HDL and to a lesser extent, apoB-containing lipoproteins and modified lipoproteins. Probably involved in the phagocytosis of apoptotic cells, via its phosphatidylserine binding activity (By similarity). Plays an important role in the uptake of HDL cholesteryl ester (By similarity).	+	[https://www.uniprot.org/uniprot/SCRB1_MOUSE SCRB1_MOUSE] Receptor for different ligands such as phospholipids, cholesterol ester, lipoproteins, phosphatidylserine and apoptotic cells. Probable receptor for HDL, located in particular region of the plasma membrane, called caveolae. Facilitates the flux of free and esterified cholesterol between the cell surface and extracellular donors and acceptors, such as HDL and to a lesser extent, apoB-containing lipoproteins and modified lipoproteins. Probably involved in the phagocytosis of apoptotic cells, via its phosphatidylserine binding activity (By similarity). Plays an important role in the uptake of HDL cholesteryl ester (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Lk3 transgenic mice~~]]	+	[[Category: Mus musculus]]
-	[[Category: Chadwick~~, A C~~]]	+	[[Category: Chadwick AC]]
-	[[Category: Peterson~~, F C~~]]	+	[[Category: Peterson FC]]
-	[[Category: Sahoo, D]]	+	[[Category: Sahoo D]]
-	[[Category: Volkman~~, B F]]~~	+	[[Category: Volkman BF]]
-	~~[[Category: Cholesterol]]~~	+
-	~~[[Category: Signaling protein]]~~	+
-	~~[[Category: Sr-bi]]~~	+
-	~~[[Category: Transmembrane domain~~]]	+

OCA at 09:16, 4 December 2019

OCA — Wed, 04 Dec 2019 09:16:07 GMT

←Older revision		Revision as of 09:16, 4 December 2019
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	==Structure of the C-terminal transmembrane domain of scavenger receptor BI (SR-BI)==		==Structure of the C-terminal transmembrane domain of scavenger receptor BI (SR-BI)==
-	<StructureSection load='5ktf' size='340' side='right' caption='[[5ktf]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='5ktf' size='340' side='right'caption='[[5ktf]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5ktf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KTF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KTF FirstGlance]. <br>		<table><tr><td colspan='2'>[[5ktf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KTF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KTF FirstGlance]. <br>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Lk3 transgenic mice]]		[[Category: Lk3 transgenic mice]]
	[[Category: Chadwick, A C]]		[[Category: Chadwick, A C]]

OCA at 18:30, 15 November 2017

OCA — Wed, 15 Nov 2017 18:30:25 GMT

←Older revision		Revision as of 18:30, 15 November 2017
Line 3:		Line 3:
	<StructureSection load='5ktf' size='340' side='right' caption='[[5ktf]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='5ktf' size='340' side='right' caption='[[5ktf]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5ktf]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KTF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KTF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5ktf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KTF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KTF FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ktf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ktf OCA], [http://pdbe.org/5ktf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ktf RCSB], [http://www.ebi.ac.uk/pdbsum/5ktf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ktf ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Scarb1, Srb1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ktf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ktf OCA], [http://pdbe.org/5ktf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ktf RCSB], [http://www.ebi.ac.uk/pdbsum/5ktf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ktf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Lk3 transgenic mice]]
	[[Category: Chadwick, A C]]		[[Category: Chadwick, A C]]
	[[Category: Peterson, F C]]		[[Category: Peterson, F C]]

OCA at 16:41, 9 March 2017

OCA — Thu, 09 Mar 2017 16:41:38 GMT

←Older revision		Revision as of 16:41, 9 March 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5ktf is ~~ON HOLD until Paper~~ Publication	+	==Structure of the C-terminal transmembrane domain of scavenger receptor BI (SR-BI)==
		+	<StructureSection load='5ktf' size='340' side='right' caption='[[5ktf]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5ktf]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KTF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KTF FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ktf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ktf OCA], [http://pdbe.org/5ktf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ktf RCSB], [http://www.ebi.ac.uk/pdbsum/5ktf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ktf ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/SCRB1_MOUSE SCRB1_MOUSE]] Receptor for different ligands such as phospholipids, cholesterol ester, lipoproteins, phosphatidylserine and apoptotic cells. Probable receptor for HDL, located in particular region of the plasma membrane, called caveolae. Facilitates the flux of free and esterified cholesterol between the cell surface and extracellular donors and acceptors, such as HDL and to a lesser extent, apoB-containing lipoproteins and modified lipoproteins. Probably involved in the phagocytosis of apoptotic cells, via its phosphatidylserine binding activity (By similarity). Plays an important role in the uptake of HDL cholesteryl ester (By similarity).
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The interaction of high-density lipoprotein (HDL) with its receptor, scavenger receptor BI (SR-BI), is critical for lowering plasma cholesterol levels and reducing the risk for cardiovascular disease. The HDL/SR-BI complex facilitates delivery of cholesterol into cells and is likely mediated by receptor dimerization. This work describes the use of nuclear magnetic resonance (NMR) spectroscopy to generate the first high-resolution structure of the C-terminal transmembrane domain of SR-BI. This region of SR-BI harbors a leucine zipper dimerization motif, which when mutated impairs the ability of the receptor to bind HDL and mediate cholesterol delivery. These losses in function correlate with the inability of SR-BI to form dimers. We also identify juxtamembrane regions of the extracellular domain of SR-BI that may interact with the lipid surface to facilitate cholesterol transport functions of the receptor.

-	~~Authors: Chadwick, A.~~C., ~~Peterson~~, ~~F.C~~., Volkman, B.F., ~~Sahoo, D~~.	+	NMR Structure of the C-Terminal Transmembrane Domain of the HDL Receptor, SR-BI, and a Functionally Relevant Leucine Zipper Motif.,Chadwick AC, Jensen DR, Hanson PJ, Lange PT, Proudfoot SC, Peterson FC, Volkman BF, Sahoo D Structure. 2017 Mar 7;25(3):446-457. doi: 10.1016/j.str.2017.01.001. Epub 2017, Feb 2. PMID:28162952<ref>PMID:28162952</ref>

-	~~Description: Structure~~ of the ~~C-terminal transmembrane domain~~ of ~~scavenger receptor BI (SR~~-~~BI)~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
-	[[Category: Peterson, F.C]]	+	<div class="pdbe-citations 5ktf" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Chadwick, A C]]
		+	[[Category: Peterson, F C]]
	[[Category: Sahoo, D]]		[[Category: Sahoo, D]]
-	[[Category: Volkman, B.F]]	+	[[Category: Volkman, B F]]
-	[[Category: ~~Chadwick, A.C~~]]	+	[[Category: Cholesterol]]
		+	[[Category: Signaling protein]]
		+	[[Category: Sr-bi]]
		+	[[Category: Transmembrane domain]]

OCA at 14:20, 9 September 2016

OCA — Fri, 09 Sep 2016 14:20:53 GMT

←Older revision		Revision as of 14:20, 9 September 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5ktf is ON HOLD	+	The entry 5ktf is ON HOLD until Paper Publication

	Authors: Chadwick, A.C., Peterson, F.C., Volkman, B.F., Sahoo, D.		Authors: Chadwick, A.C., Peterson, F.C., Volkman, B.F., Sahoo, D.

OCA: Protected "5ktf" [edit=sysop:move=sysop]

OCA — Tue, 26 Jul 2016 12:52:25 GMT

Protected "5ktf" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:52, 26 July 2016

OCA: New page: '''Unreleased structure''' The entry 5ktf is ON HOLD Authors: Chadwick, A.C., Peterson, F.C., Volkman, B.F., Sahoo, D. Description: Structure of the C-terminal transmembrane domain of ...

OCA — Tue, 26 Jul 2016 12:52:23 GMT

New page: '''Unreleased structure''' The entry 5ktf is ON HOLD Authors: Chadwick, A.C., Peterson, F.C., Volkman, B.F., Sahoo, D. Description: Structure of the C-terminal transmembrane domain of ...

New page

'''Unreleased structure'''

The entry 5ktf is ON HOLD

Authors: Chadwick, A.C., Peterson, F.C., Volkman, B.F., Sahoo, D.

Description: Structure of the C-terminal transmembrane domain of scavenger receptor BI (SR-BI)
[[Category: Unreleased Structures]]
[[Category: Peterson, F.C]]
[[Category: Sahoo, D]]
[[Category: Volkman, B.F]]
[[Category: Chadwick, A.C]]