5kyo - Revision history

OCA at 12:45, 4 October 2023

OCA — Wed, 04 Oct 2023 12:45:07 GMT

←Older revision		Revision as of 12:45, 4 October 2023
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	<StructureSection load='5kyo' size='340' side='right'caption='[[5kyo]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='5kyo' size='340' side='right'caption='[[5kyo]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5kyo]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KYO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5KYO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5kyo]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Sphingobium_yanoikuyae Sphingobium yanoikuyae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KYO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KYO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5kyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kyo OCA], [~~http~~://pdbe.org/5kyo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5kyo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5kyo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5kyo ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5kyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kyo OCA], [https://pdbe.org/5kyo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5kyo RCSB], [https://www.ebi.ac.uk/pdbsum/5kyo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5kyo ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A1C9CIU0_SPHYA A0A1C9CIU0_SPHYA]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Drinkwater, N]]	+	[[Category: Sphingobium yanoikuyae]]
-	[[Category: Dumsday~~, G J~~]]	+	[[Category: Drinkwater N]]
-	[[Category: McGowan, S]]	+	[[Category: Dumsday GJ]]
-	[[Category: Unterweger, B]]	+	[[Category: McGowan S]]
-	~~[[Category: 8-cineole hydroxylation]]~~	+	[[Category: Unterweger B]]
-	~~[[Category: Cytochrome p450 monooxygenase]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 06:37, 5 August 2020

OCA — Wed, 05 Aug 2020 06:37:39 GMT

←Older revision		Revision as of 06:37, 5 August 2020
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	==Crystal Structure of CYP101J2==		==Crystal Structure of CYP101J2==
-	<StructureSection load='5kyo' size='340' side='right' caption='[[5kyo]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='5kyo' size='340' side='right'caption='[[5kyo]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5kyo]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KYO OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5KYO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5kyo]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KYO OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5KYO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5kyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kyo OCA], [http://pdbe.org/5kyo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kyo RCSB], [http://www.ebi.ac.uk/pdbsum/5kyo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kyo ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5kyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kyo OCA], [http://pdbe.org/5kyo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kyo RCSB], [http://www.ebi.ac.uk/pdbsum/5kyo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kyo ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	==See Also==		==See Also==
-	*[[Cytochrome P450\|Cytochrome P450]]	+	*[[Cytochrome P450 3D structures\|Cytochrome P450 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Drinkwater, N]]		[[Category: Drinkwater, N]]
	[[Category: Dumsday, G J]]		[[Category: Dumsday, G J]]

OCA at 07:32, 27 April 2017

OCA — Thu, 27 Apr 2017 07:32:50 GMT

←Older revision		Revision as of 07:32, 27 April 2017
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	</div>		</div>
	<div class="pdbe-citations 5kyo" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5kyo" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Cytochrome P450\|Cytochrome P450]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 16:38, 4 January 2017

OCA — Wed, 04 Jan 2017 16:38:32 GMT

←Older revision		Revision as of 16:38, 4 January 2017
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-	'''Unreleased structure'''

-	~~The entry~~ 5kyo is ~~ON HOLD until Paper~~ Publication	+	==Crystal Structure of CYP101J2==
		+	<StructureSection load='5kyo' size='340' side='right' caption='[[5kyo]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5kyo]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KYO FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kyo OCA], [http://pdbe.org/5kyo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kyo RCSB], [http://www.ebi.ac.uk/pdbsum/5kyo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kyo ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The cytochrome P450 monooxygenases (P450s) catalyse a vast array of oxygenation reactions that can be useful in biocatalytic applications. CYP101J2 from Sphingobium yanoikuyae is a P450 that catalyses the hydroxylation of 1,8-cineole. Here we report the crystallisation and X-ray structure elucidation of recombinant CYP101J2 to 1.8 A resolution. The CYP101J2 structure shows the canonical P450-fold and has an open conformation in the absence of substrate. Analysis of the structure revealed that CYP101J2, in the absence of substrate, forms a well-ordered substrate-binding channel that suggests a unique form of substrate guidance in comparison to other bacterial 1,8-cineole-hydroxylating P450 enzymes. This article is protected by copyright. All rights reserved.

-	~~Authors: Unterweger~~, B., Drinkwater, N., ~~Dumsday~~, ~~G.J.~~, ~~McGowan~~, S.	+	X-ray crystal structure of cytochrome P450 monooxygenase CYP101J2 from Sphingobium yanoikuyae strain B2.,Unterweger B, Drinkwater N, Johanesen P, Lyras D, Dumsday GJ, McGowan S Proteins. 2016 Dec 9. doi: 10.1002/prot.25227. PMID:27936485<ref>PMID:27936485</ref>

-	~~Description: Crystal Structure~~ of ~~CYP101J2~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category: Unreleased Structures]]~~	+	</div>
-	~~[[Category~~: ~~Dumsday, G.J]]~~	+	<div class="pdbe-citations 5kyo" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Drinkwater, N]]		[[Category: Drinkwater, N]]
		+	[[Category: Dumsday, G J]]
		+	[[Category: McGowan, S]]
	[[Category: Unterweger, B]]		[[Category: Unterweger, B]]
-	[[Category: ~~Mcgowan, S~~]]	+	[[Category: 8-cineole hydroxylation]]
		+	[[Category: Cytochrome p450 monooxygenase]]
		+	[[Category: Oxidoreductase]]

OCA at 13:53, 10 August 2016

OCA — Wed, 10 Aug 2016 13:53:50 GMT

←Older revision		Revision as of 13:53, 10 August 2016
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5kyo is ON HOLD	+	The entry 5kyo is ON HOLD until Paper Publication

	Authors: Unterweger, B., Drinkwater, N., Dumsday, G.J., McGowan, S.		Authors: Unterweger, B., Drinkwater, N., Dumsday, G.J., McGowan, S.

OCA at 02:11, 4 August 2016

OCA — Thu, 04 Aug 2016 02:11:36 GMT

←Older revision		Revision as of 02:11, 4 August 2016
Line 3:		Line 3:
	The entry 5kyo is ON HOLD		The entry 5kyo is ON HOLD

-	Authors: ~~Birgit~~ Unterweger, ~~Nyssa~~ Drinkwater, ~~Geoffrey J~~.Dumsday, ~~Sheena~~ McGowan	+	Authors: Unterweger, B., Drinkwater, N., Dumsday, G.J., McGowan, S.

	Description: Crystal Structure of CYP101J2		Description: Crystal Structure of CYP101J2
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: ~~Birgit Unterweger~~, ~~Nyssa~~ Drinkwater, ~~Geoffrey J.Dumsday~~, ~~Sheena~~ Mcgowan]]	+	[[Category: Dumsday, G.J]]
		+	[[Category: Drinkwater, N]]
		+	[[Category: Unterweger, B]]
		+	[[Category: Mcgowan, S]]

OCA: Protected "5kyo" [edit=sysop:move=sysop]

OCA — Wed, 27 Jul 2016 13:32:55 GMT

Protected "5kyo" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:32, 27 July 2016

OCA: New page: '''Unreleased structure''' The entry 5kyo is ON HOLD Authors: Birgit Unterweger, Nyssa Drinkwater, Geoffrey J.Dumsday, Sheena McGowan Description: Crystal Structure of CYP101J2 [[Categ...

OCA — Wed, 27 Jul 2016 13:32:54 GMT

New page: '''Unreleased structure''' The entry 5kyo is ON HOLD Authors: Birgit Unterweger, Nyssa Drinkwater, Geoffrey J.Dumsday, Sheena McGowan Description: Crystal Structure of CYP101J2 [[Categ...

New page

'''Unreleased structure'''

The entry 5kyo is ON HOLD

Authors: Birgit Unterweger, Nyssa Drinkwater, Geoffrey J.Dumsday, Sheena McGowan

Description: Crystal Structure of CYP101J2
[[Category: Unreleased Structures]]
[[Category: Birgit Unterweger, Nyssa Drinkwater, Geoffrey J.Dumsday, Sheena Mcgowan]]