5lfk - Revision history

OCA at 08:58, 11 October 2023

OCA — Wed, 11 Oct 2023 08:58:35 GMT

←Older revision		Revision as of 08:58, 11 October 2023
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	<StructureSection load='5lfk' size='340' side='right'caption='[[5lfk]], [[Resolution\|resolution]] 3.09Å' scene=''>		<StructureSection load='5lfk' size='340' side='right'caption='[[5lfk]], [[Resolution\|resolution]] 3.09Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lfk]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LFK OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5LFK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lfk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LFK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LFK FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ATP:ADENOSINE~~-~~5-TRIPHOSPHATE'>ATP</scene>~~, ~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.094Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~NEP~~:N1-~~PHOSPHONOHISTIDINE~~'>~~NEP~~</scene><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NEP:N1-PHOSPHONOHISTIDINE'>NEP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<~~tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lfk OCA], [https://pdbe.org/5lfk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lfk RCSB], [https://www.ebi.ac.uk/pdbsum/5lfk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lfk ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5lfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lfk OCA], [~~http~~://pdbe.org/5lfk PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5lfk RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5lfk PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5lfk ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/CPXA_ECOLI CPXA_ECOLI]] This protein is involved in several diverse cellular processes, such as the functioning of acetohydroxyacid synthetase I, in the biosynthesis of isoleucine and valine, the TraJ protein activation activity for tra gene expression in F plasmid, and the synthesis, translocation, or stability of cell envelope proteins. Activates CpxR by phosphorylation.	+	[https://www.uniprot.org/uniprot/CPXA_ECOLI CPXA_ECOLI] This protein is involved in several diverse cellular processes, such as the functioning of acetohydroxyacid synthetase I, in the biosynthesis of isoleucine and valine, the TraJ protein activation activity for tra gene expression in F plasmid, and the synthesis, translocation, or stability of cell envelope proteins. Activates CpxR by phosphorylation.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Histidine kinase~~]]	+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Alzari~~, P M~~]]	+	[[Category: Alzari PM]]
-	[[Category: Mechaly~~, A E]]~~	+	[[Category: Mechaly AE]]
-	~~[[Category: Transferase]]~~	+
-	~~[[Category: Two-componet system~~]]	+

OCA at 07:09, 5 August 2020

OCA — Wed, 05 Aug 2020 07:09:21 GMT

←Older revision		Revision as of 07:09, 5 August 2020
Line 1:		Line 1:

	==Crystal structure of CpxAHDC (hemiphosphorylated form)==		==Crystal structure of CpxAHDC (hemiphosphorylated form)==
-	<StructureSection load='5lfk' size='340' side='right' caption='[[5lfk]], [[Resolution\|resolution]] 3.09Å' scene=''>	+	<StructureSection load='5lfk' size='340' side='right'caption='[[5lfk]], [[Resolution\|resolution]] 3.09Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lfk]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LFK OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5LFK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lfk]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LFK OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5LFK FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NEP:N1-PHOSPHONOHISTIDINE'>NEP</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NEP:N1-PHOSPHONOHISTIDINE'>NEP</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5lfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lfk OCA], [http://pdbe.org/5lfk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lfk RCSB], [http://www.ebi.ac.uk/pdbsum/5lfk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lfk ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5lfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lfk OCA], [http://pdbe.org/5lfk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lfk RCSB], [http://www.ebi.ac.uk/pdbsum/5lfk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lfk ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 25:		Line 25:
	</StructureSection>		</StructureSection>
	[[Category: Histidine kinase]]		[[Category: Histidine kinase]]
		+	[[Category: Large Structures]]
	[[Category: Alzari, P M]]		[[Category: Alzari, P M]]
	[[Category: Mechaly, A E]]		[[Category: Mechaly, A E]]
	[[Category: Transferase]]		[[Category: Transferase]]
	[[Category: Two-componet system]]		[[Category: Two-componet system]]

OCA at 09:29, 3 August 2017

OCA — Thu, 03 Aug 2017 09:29:40 GMT

←Older revision		Revision as of 09:29, 3 August 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5lfk is ~~ON HOLD~~	+	==Crystal structure of CpxAHDC (hemiphosphorylated form)==
		+	<StructureSection load='5lfk' size='340' side='right' caption='[[5lfk]], [[Resolution\|resolution]] 3.09Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5lfk]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LFK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LFK FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NEP:N1-PHOSPHONOHISTIDINE'>NEP</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lfk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lfk OCA], [http://pdbe.org/5lfk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lfk RCSB], [http://www.ebi.ac.uk/pdbsum/5lfk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lfk ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CPXA_ECOLI CPXA_ECOLI]] This protein is involved in several diverse cellular processes, such as the functioning of acetohydroxyacid synthetase I, in the biosynthesis of isoleucine and valine, the TraJ protein activation activity for tra gene expression in F plasmid, and the synthesis, translocation, or stability of cell envelope proteins. Activates CpxR by phosphorylation.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Bacterial two-component systems consist of a sensor histidine kinase (HK) and a response regulator (RR). HKs are homodimers that catalyze the autophosphorylation of a histidine residue and the subsequent phosphoryl transfer to its RR partner, triggering an adaptive response. How the HK autokinase and phosphotransferase activities are coordinated remains unclear. Here, we report X-ray structures of the prototypical HK CpxA trapped as a hemi-phosphorylated dimer, and of the receiver domain from the RR partner, CpxR. Our results reveal that the two catalytic reactions can occur simultaneously, one in each protomer of the asymmetric CpxA dimer. Furthermore, the increase of autokinase activity in the presence of phosphotransfer-impaired CpxR put forward the idea of an allosteric switching mechanism, according to which CpxR binding to one CpxA protomer triggers autophosphorylation in the second protomer. The ensuing dynamical model provides a mechanistic explanation of how HKs can efficiently orchestrate two catalytic reactions involving large-scale protein motions.

-	~~Authors:~~ Mechaly, A~~.E.~~, ~~Alzari~~, P.M.	+	Structural Coupling between Autokinase and Phosphotransferase Reactions in a Bacterial Histidine Kinase.,Mechaly AE, Soto Diaz S, Sassoon N, Buschiazzo A, Betton JM, Alzari PM Structure. 2017 Jun 6;25(6):939-944.e3. doi: 10.1016/j.str.2017.04.011. Epub 2017, May 25. PMID:28552574<ref>PMID:28552574</ref>

-	~~Description: Crystal structure~~ of ~~CpxAHDC (hemiphosphorylated form)~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
-	[[Category: Alzari, P.M]]	+	<div class="pdbe-citations 5lfk" style="background-color:#fffaf0;"></div>
-	[[Category: Mechaly, A.E]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Histidine kinase]]
		+	[[Category: Alzari, P M]]
		+	[[Category: Mechaly, A E]]
		+	[[Category: Transferase]]
		+	[[Category: Two-componet system]]

OCA: Protected "5lfk" [edit=sysop:move=sysop]

OCA — Thu, 14 Jul 2016 10:03:51 GMT

Protected "5lfk" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:03, 14 July 2016

OCA: New page: '''Unreleased structure''' The entry 5lfk is ON HOLD Authors: Mechaly, A.E., Alzari, P.M. Description: Crystal structure of CpxAHDC (hemiphosphorylated form) [[Category: Unreleased Str...

OCA — Thu, 14 Jul 2016 10:03:50 GMT

New page: '''Unreleased structure''' The entry 5lfk is ON HOLD Authors: Mechaly, A.E., Alzari, P.M. Description: Crystal structure of CpxAHDC (hemiphosphorylated form) [[Category: Unreleased Str...

New page

'''Unreleased structure'''

The entry 5lfk is ON HOLD

Authors: Mechaly, A.E., Alzari, P.M.

Description: Crystal structure of CpxAHDC (hemiphosphorylated form)
[[Category: Unreleased Structures]]
[[Category: Alzari, P.M]]
[[Category: Mechaly, A.E]]