5lkn - Revision history

OCA at 10:15, 14 June 2023

OCA — Wed, 14 Jun 2023 10:15:10 GMT

←Older revision		Revision as of 10:15, 14 June 2023
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	==NMR solution structure of human FNIII domain 2 of NCAM==		==NMR solution structure of human FNIII domain 2 of NCAM==
-	<StructureSection load='5lkn' size='340' side='right'caption='[[5lkn~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='5lkn' size='340' side='right'caption='[[5lkn]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lkn]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LKN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5LKN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lkn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LKN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LKN FirstGlance]. <br>
-	</td></tr>~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NCAM1, NCAM ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lkn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lkn OCA], [https://pdbe.org/5lkn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lkn RCSB], [https://www.ebi.ac.uk/pdbsum/5lkn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lkn ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5lkn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lkn OCA], [~~http~~://pdbe.org/5lkn PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5lkn RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5lkn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5lkn ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/NCAM1_HUMAN NCAM1_HUMAN]] This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc.	+	[https://www.uniprot.org/uniprot/NCAM1_HUMAN NCAM1_HUMAN] This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Abskharon~~, R N.N~~]]	+	[[Category: Abskharon RNN]]
-	[[Category: Amin, L]]	+	[[Category: Amin L]]
-	[[Category: Biljan, I]]	+	[[Category: Biljan I]]
-	[[Category: Giachin, G]]	+	[[Category: Giachin G]]
-	[[Category: Ilc, G]]	+	[[Category: Ilc G]]
-	[[Category: Legname, G]]	+	[[Category: Legname G]]
-	[[Category: Plavec, J]]	+	[[Category: Plavec J]]
-	[[Category: Salzano, G]]	+	[[Category: Salzano G]]
-	[[Category: Slapsak, U]]	+	[[Category: Slapsak U]]
-	[[Category: Zupancic, B]]	+	[[Category: Zupancic B]]
-	~~[[Category: Cell adhesion]]~~	+
-	~~[[Category: Fibronectin type iii domain]]~~	+
-	~~[[Category: Protein interaction~~]]	+

OCA at 13:07, 10 May 2019

OCA — Fri, 10 May 2019 13:07:20 GMT

←Older revision		Revision as of 13:07, 10 May 2019
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	==NMR solution structure of human FNIII domain 2 of NCAM==		==NMR solution structure of human FNIII domain 2 of NCAM==
-	<StructureSection load='5lkn' size='340' side='right' caption='[[5lkn]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='5lkn' size='340' side='right'caption='[[5lkn]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lkn]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LKN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LKN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lkn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LKN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LKN FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lkn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lkn OCA], [http://pdbe.org/5lkn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lkn RCSB], [http://www.ebi.ac.uk/pdbsum/5lkn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lkn ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NCAM1, NCAM ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lkn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lkn OCA], [http://pdbe.org/5lkn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lkn RCSB], [http://www.ebi.ac.uk/pdbsum/5lkn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lkn ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Abskharon, R N.N]]		[[Category: Abskharon, R N.N]]
	[[Category: Amin, L]]		[[Category: Amin, L]]

OCA at 06:19, 21 September 2016

OCA — Wed, 21 Sep 2016 06:19:27 GMT

←Older revision		Revision as of 06:19, 21 September 2016
Line 8:		Line 8:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/NCAM1_HUMAN NCAM1_HUMAN]] This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc.		[[http://www.uniprot.org/uniprot/NCAM1_HUMAN NCAM1_HUMAN]] This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The cellular form of the prion protein (PrPC) is a highly conserved glycoprotein mostly expressed in the central and peripheral nervous systems by different cell types in mammals. A misfolded, pathogenic isoform, denoted as prion, is related to a class of neurodegenerative diseases known as transmissible spongiform encephalopathy. PrPC function has not been unequivocally clarified and it is rather defined as a pleiotropic protein likely acting as a dynamic cell surface scaffolding protein for the assembly of different signalling modules. Among the variety of PrPC protein interactors, the neuronal cell adhesion molecule (NCAM) has been studied in vivo, but the structural basis of this functional interaction is still a matter of debate. Here we focused on the structural determinants responsible for human PrPC (HuPrP) and NCAM interaction using Stimulated Emission Depletion (STED) nanoscopy, surface plasma resonance (SPR) and NMR spectroscopy approaches. PrPC co-localizes with NCAM in mouse hyppocampal neurons and this interaction is mainly mediated by the intrinsically disordered PrPC N-terminal tail, which binds with high affinity to NCAM Fibronectin type-3 domain. NMR structural investigations revealed surface interacting epitopes governing the interaction between HuPrP N-terminus and the second module of NCAM Fibronectin type-3 domain. Our data provided molecular details about the interaction between HuPrP and NCAM Fibronectin domain, and revealed a new role of PrPC N-terminus as a dynamic and functional element responsible for protein-protein interaction.
		+
		+	The N-terminus of the Prion Protein Mediates Functional Interactions with NCAM Fibronectin Domain.,Slapsak U, Salzano G, Amin L, Abskharon RN, Ilc G, Zupancic B, Biljan I, Plavec J, Giachin G, Legname G J Biol Chem. 2016 Aug 17. pii: jbc.M116.743435. PMID:27535221<ref>PMID:27535221</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5lkn" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 15:37, 14 September 2016

OCA — Wed, 14 Sep 2016 15:37:01 GMT

←Older revision		Revision as of 15:37, 14 September 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5lkn is ~~ON HOLD~~	+	==NMR solution structure of human FNIII domain 2 of NCAM==
-		+	<StructureSection load='5lkn' size='340' side='right' caption='[[5lkn]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5lkn]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LKN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LKN FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lkn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lkn OCA], [http://pdbe.org/5lkn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lkn RCSB], [http://www.ebi.ac.uk/pdbsum/5lkn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lkn ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NCAM1_HUMAN NCAM1_HUMAN]] This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Abskharon, R N.N]]
		+	[[Category: Amin, L]]
		+	[[Category: Biljan, I]]
		+	[[Category: Giachin, G]]
		+	[[Category: Ilc, G]]
		+	[[Category: Legname, G]]
		+	[[Category: Plavec, J]]
		+	[[Category: Salzano, G]]
		+	[[Category: Slapsak, U]]
		+	[[Category: Zupancic, B]]
		+	[[Category: Cell adhesion]]
		+	[[Category: Fibronectin type iii domain]]
		+	[[Category: Protein interaction]]

OCA: Protected "5lkn" [edit=sysop:move=sysop]

OCA — Thu, 04 Aug 2016 02:55:02 GMT

Protected "5lkn" [edit=sysop:move=sysop]

←Older revision

Revision as of 02:55, 4 August 2016

OCA: New page: '''Unreleased structure''' The entry 5lkn is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Thu, 04 Aug 2016 02:55:01 GMT

New page: '''Unreleased structure''' The entry 5lkn is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5lkn is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]