5lol - Revision history

OCA at 18:37, 18 October 2023

OCA — Wed, 18 Oct 2023 18:37:40 GMT

←Older revision		Revision as of 18:37, 18 October 2023
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	==Glutathione-bound Dehydroascorbate Reductase 2 of Arabidopsis thaliana==		==Glutathione-bound Dehydroascorbate Reductase 2 of Arabidopsis thaliana==
-	<StructureSection load='5lol' size='340' side='right' caption='[[5lol]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='5lol' size='340' side='right'caption='[[5lol]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lol]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Arath Arath~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LOL OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5LOL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lol]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LOL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LOL FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=GOL:GLYCEROL'>GOL</scene~~>, ~~<scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~DHAR2, DHAR, At1g75270, F22H5.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=3702 ARATH])</td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<~~tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/Glutathione_transferase Glutathione transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.18 2.5.1.18]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lol OCA], [https://pdbe.org/5lol PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lol RCSB], [https://www.ebi.ac.uk/pdbsum/5lol PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lol ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5lol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lol OCA], [~~http~~://pdbe.org/5lol PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5lol RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5lol PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5lol ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/DHAR2_ARATH DHAR2_ARATH]] Displays a dual function. As a soluble protein, exhibits glutathione-dependent thiol transferase and dehydroascorbate (DHA) reductase activities (PubMed:12077129). Exhibits glutathione-dependent thiol transferase and dehydroascorbate (DHA) reductase activities. Key component of the ascorbate recycling system. Involved in the redox homeostasis, especially in scavenging of ROS under oxidative stresses. Plays a role in ozone tolerance.<ref>PMID:12077129</ref> <ref>PMID:16361320</ref>	+	[https://www.uniprot.org/uniprot/DHAR2_ARATH DHAR2_ARATH] Displays a dual function. As a soluble protein, exhibits glutathione-dependent thiol transferase and dehydroascorbate (DHA) reductase activities (PubMed:12077129). Exhibits glutathione-dependent thiol transferase and dehydroascorbate (DHA) reductase activities. Key component of the ascorbate recycling system. Involved in the redox homeostasis, especially in scavenging of ROS under oxidative stresses. Plays a role in ozone tolerance.<ref>PMID:12077129</ref> <ref>PMID:16361320</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 5lol" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5lol" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Glutathione S-transferase 3D structures\|Glutathione S-transferase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arath~~]]	+	[[Category: Arabidopsis thaliana]]
-	[[Category: ~~Glutathione transferase~~]]	+	[[Category: Large Structures]]
-	[[Category: Bodra, N]]	+	[[Category: Bodra N]]
-	[[Category: Messens, J]]	+	[[Category: Messens J]]
-	[[Category: Pallo, A]]	+	[[Category: Pallo A]]
-	[[Category: Young~~, D R]]~~	+	[[Category: Young DR]]
-	~~[[Category: Dehydroascorbate reductase]]~~	+
-	~~[[Category: Glutathione dehydrogenase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 10:48, 16 November 2017

OCA — Thu, 16 Nov 2017 10:48:07 GMT

←Older revision		Revision as of 10:48, 16 November 2017
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-	'''Unreleased structure'''

-	~~The entry~~ 5lol is ~~ON HOLD~~	+	==Glutathione-bound Dehydroascorbate Reductase 2 of Arabidopsis thaliana==
		+	<StructureSection load='5lol' size='340' side='right' caption='[[5lol]], [[Resolution\|resolution]] 2.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5lol]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LOL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LOL FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=GSH:GLUTATHIONE'>GSH</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DHAR2, DHAR, At1g75270, F22H5.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutathione_transferase Glutathione transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.18 2.5.1.18] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lol FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lol OCA], [http://pdbe.org/5lol PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lol RCSB], [http://www.ebi.ac.uk/pdbsum/5lol PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lol ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DHAR2_ARATH DHAR2_ARATH]] Displays a dual function. As a soluble protein, exhibits glutathione-dependent thiol transferase and dehydroascorbate (DHA) reductase activities (PubMed:12077129). Exhibits glutathione-dependent thiol transferase and dehydroascorbate (DHA) reductase activities. Key component of the ascorbate recycling system. Involved in the redox homeostasis, especially in scavenging of ROS under oxidative stresses. Plays a role in ozone tolerance.<ref>PMID:12077129</ref> <ref>PMID:16361320</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Dehydroascorbate reductase (DHAR) catalyzes the glutathione (GSH)-dependent reduction of dehydroascorbate and plays a direct role in regenerating ascorbic acid, an essential plant antioxidant vital for defense against oxidative stress. DHAR enzymes bear close structural homology to the glutathione transferase (GST) superfamily of enzymes and contain the same active site motif, but most GSTs do not exhibit DHAR activity. The presence of a cysteine at the active site is essential for the catalytic functioning of DHAR, as mutation of this cysteine abolishes the activity. Here we present the crystal structure of DHAR2 from Arabidopsis thaliana with GSH bound to the catalytic cysteine. This structure reveals localized conformational differences around the active site which distinguishes the GSH-bound DHAR2 structure from that of DHAR1. We also unraveled the enzymatic step in which DHAR releases oxidized glutathione (GSSG). To consolidate our structural and kinetic findings, we investigated potential conformational flexibility in DHAR2 by normal mode analysis and found that subdomain mobility could be linked to GSH binding or GSSG release.

-	~~Authors~~: ~~Young~~, D~~.R.~~, ~~Pallo~~, A., ~~Bodra~~, N., ~~Messens~~, J.	+	Arabidopsis thaliana dehydroascorbate reductase 2: Conformational flexibility during catalysis.,Bodra N, Young D, Astolfi Rosado L, Pallo A, Wahni K, De Proft F, Huang J, Van Breusegem F, Messens J Sci Rep. 2017 Feb 14;7:42494. doi: 10.1038/srep42494. PMID:28195196<ref>PMID:28195196</ref>

-	~~Description: Glutathione-bound Dehydroascorbate Reductase 2~~ of ~~Arabidopsis thaliana~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
-	[[Category: ~~Pallo, A~~]]	+	<div class="pdbe-citations 5lol" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Arath]]
		+	[[Category: Glutathione transferase]]
	[[Category: Bodra, N]]		[[Category: Bodra, N]]
-	[[Category: Young, D.R]]
	[[Category: Messens, J]]		[[Category: Messens, J]]
		+	[[Category: Pallo, A]]
		+	[[Category: Young, D R]]
		+	[[Category: Dehydroascorbate reductase]]
		+	[[Category: Glutathione dehydrogenase]]
		+	[[Category: Transferase]]

OCA: Protected "5lol" [edit=sysop:move=sysop]

OCA — Fri, 09 Sep 2016 15:07:07 GMT

Protected "5lol" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:07, 9 September 2016

OCA: New page: '''Unreleased structure''' The entry 5lol is ON HOLD Authors: Young, D.R., Pallo, A., Bodra, N., Messens, J. Description: Glutathione-bound Dehydroascorbate Reductase 2 of Arabidopsis ...

OCA — Fri, 09 Sep 2016 15:07:06 GMT

New page: '''Unreleased structure''' The entry 5lol is ON HOLD Authors: Young, D.R., Pallo, A., Bodra, N., Messens, J. Description: Glutathione-bound Dehydroascorbate Reductase 2 of Arabidopsis ...

New page

'''Unreleased structure'''

The entry 5lol is ON HOLD

Authors: Young, D.R., Pallo, A., Bodra, N., Messens, J.

Description: Glutathione-bound Dehydroascorbate Reductase 2 of Arabidopsis thaliana
[[Category: Unreleased Structures]]
[[Category: Pallo, A]]
[[Category: Bodra, N]]
[[Category: Young, D.R]]
[[Category: Messens, J]]