5lq1 - Revision history

OCA at 18:40, 18 October 2023

OCA — Wed, 18 Oct 2023 18:40:55 GMT

←Older revision		Revision as of 18:40, 18 October 2023
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	<StructureSection load='5lq1' size='340' side='right'caption='[[5lq1]], [[Resolution\|resolution]] 1.41Å' scene=''>		<StructureSection load='5lq1' size='340' side='right'caption='[[5lq1]], [[Resolution\|resolution]] 1.41Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lq1]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQ1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5LQ1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lq1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichodesmium_erythraeum_IMS101 Trichodesmium erythraeum IMS101]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LQ1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GB:METHYLPHOSPHONIC+ACID+ESTER+GROUP'>GB</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.41Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5jvb\|5jvb]]~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GB:METHYLPHOSPHONIC+ACID+ESTER+GROUP'>GB</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5lq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lq1 OCA], [~~http~~://pdbe.org/5lq1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5lq1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5lq1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5lq1 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lq1 OCA], [https://pdbe.org/5lq1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lq1 RCSB], [https://www.ebi.ac.uk/pdbsum/5lq1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lq1 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q119I9_TRIEI Q119I9_TRIEI]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Adams~~, N B.P~~]]	+	[[Category: Trichodesmium erythraeum IMS101]]
-	[[Category: Bibby~~, T S~~]]	+	[[Category: Adams NBP]]
-	[[Category: Bisson, C]]	+	[[Category: Bibby TS]]
-	[[Category: Hitchcock, A]]	+	[[Category: Bisson C]]
-	[[Category: Hunter~~, C N~~]]	+	[[Category: Hitchcock A]]
-	[[Category: Polyviou, D]]	+	[[Category: Hunter CN]]
-	~~[[Category: Abc transporter]]~~	+	[[Category: Polyviou D]]
-	~~[[Category: Methylphosphonate]]~~	+
-	~~[[Category: Periplasmic binding protein]]~~	+
-	~~[[Category: Phosphite]]~~	+
-	~~[[Category: Transport protein~~]]	+

OCA at 10:46, 12 August 2020

OCA — Wed, 12 Aug 2020 10:46:20 GMT

←Older revision		Revision as of 10:46, 12 August 2020
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	==1.41 A resolution structure of PtxB from Trichodesmium erythraeum IMS101 in complex with methylphosphonate==		==1.41 A resolution structure of PtxB from Trichodesmium erythraeum IMS101 in complex with methylphosphonate==
-	<StructureSection load='5lq1' size='340' side='right' caption='[[5lq1]], [[Resolution\|resolution]] 1.41Å' scene=''>	+	<StructureSection load='5lq1' size='340' side='right'caption='[[5lq1]], [[Resolution\|resolution]] 1.41Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lq1]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQ1 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5LQ1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lq1]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQ1 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5LQ1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GB:METHYLPHOSPHONIC+ACID+ESTER+GROUP'>GB</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GB:METHYLPHOSPHONIC+ACID+ESTER+GROUP'>GB</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5jvb\|5jvb]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5jvb\|5jvb]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5lq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lq1 OCA], [http://pdbe.org/5lq1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lq1 RCSB], [http://www.ebi.ac.uk/pdbsum/5lq1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lq1 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5lq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lq1 OCA], [http://pdbe.org/5lq1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lq1 RCSB], [http://www.ebi.ac.uk/pdbsum/5lq1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lq1 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Adams, N B.P]]		[[Category: Adams, N B.P]]
	[[Category: Bibby, T S]]		[[Category: Bibby, T S]]

OCA at 07:08, 6 December 2017

OCA — Wed, 06 Dec 2017 07:08:30 GMT

←Older revision		Revision as of 07:08, 6 December 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5lq1 is ~~ON HOLD until Paper~~ Publication	+	==1.41 A resolution structure of PtxB from Trichodesmium erythraeum IMS101 in complex with methylphosphonate==
		+	<StructureSection load='5lq1' size='340' side='right' caption='[[5lq1]], [[Resolution\|resolution]] 1.41Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5lq1]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LQ1 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GB:METHYLPHOSPHONIC+ACID+ESTER+GROUP'>GB</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5jvb\|5jvb]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lq1 OCA], [http://pdbe.org/5lq1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lq1 RCSB], [http://www.ebi.ac.uk/pdbsum/5lq1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lq1 ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Inorganic phosphate is the major bioavailable form of the essential nutrient phosphorus. However, the concentration of phosphate in most natural habitats is low enough to limit microbial growth. Under phosphate-depleted conditions some bacteria utilise phosphite and hypophosphite as alternative sources of phosphorus, but the molecular basis of reduced phosphorus acquisition from the environment is not fully understood. Here, we present crystal structures and ligand binding affinities of periplasmic binding proteins from bacterial phosphite and hypophosphite ATP-binding cassette transporters. We reveal that phosphite and hypophosphite specificity results from a combination of steric selection and the presence of a P-H...pi interaction between the ligand and a conserved aromatic residue in the ligand-binding pocket. The characterisation of high affinity and specific transporters has implications for the marine phosphorus redox cycle, and might aid the use of phosphite as an alternative phosphorus source in biotechnological, industrial and agricultural applications.

-	~~Authors~~:	+	The molecular basis of phosphite and hypophosphite recognition by ABC-transporters.,Bisson C, Adams NBP, Stevenson B, Brindley AA, Polyviou D, Bibby TS, Baker PJ, Hunter CN, Hitchcock A Nat Commun. 2017 Nov 23;8(1):1746. doi: 10.1038/s41467-017-01226-8. PMID:29170493<ref>PMID:29170493</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5lq1" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Adams, N B.P]]
		+	[[Category: Bibby, T S]]
		+	[[Category: Bisson, C]]
		+	[[Category: Hitchcock, A]]
		+	[[Category: Hunter, C N]]
		+	[[Category: Polyviou, D]]
		+	[[Category: Abc transporter]]
		+	[[Category: Methylphosphonate]]
		+	[[Category: Periplasmic binding protein]]
		+	[[Category: Phosphite]]
		+	[[Category: Transport protein]]

OCA: Protected "5lq1" [edit=sysop:move=sysop]

OCA — Fri, 09 Sep 2016 15:10:36 GMT

Protected "5lq1" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:10, 9 September 2016

OCA: New page: '''Unreleased structure''' The entry 5lq1 is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

OCA — Fri, 09 Sep 2016 15:10:35 GMT

New page: '''Unreleased structure''' The entry 5lq1 is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5lq1 is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]