5luu - Revision history

OCA at 18:50, 18 October 2023

OCA — Wed, 18 Oct 2023 18:50:36 GMT

←Older revision		Revision as of 18:50, 18 October 2023
Line 1:		Line 1:

	==Structure of the first bromodomain of BRD4 with a pyrazolo[4,3-c]pyridin fragment==		==Structure of the first bromodomain of BRD4 with a pyrazolo[4,3-c]pyridin fragment==
-	<StructureSection load='5luu' size='340' side='right' caption='[[5luu]], [[Resolution\|resolution]] 1.61Å' scene=''>	+	<StructureSection load='5luu' size='340' side='right'caption='[[5luu]], [[Resolution\|resolution]] 1.61Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5luu]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LUU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5LUU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5luu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LUU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LUU FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=77X:1-(3-PHENYL-1,4,6,7-TETRAHYDROPYRAZOLO[4,3-C]PYRIDIN-5-YL)PROPAN-1-ONE'>77X</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.61Å</td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BRD4, HUNK1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=77X:1-(3-PHENYL-1,4,6,7-TETRAHYDROPYRAZOLO[4,3-C]PYRIDIN-5-YL)PROPAN-1-ONE'>77X</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5luu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5luu OCA], [~~http~~://pdbe.org/5luu PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5luu RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5luu PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5luu ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5luu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5luu OCA], [https://pdbe.org/5luu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5luu RCSB], [https://www.ebi.ac.uk/pdbsum/5luu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5luu ProSAT]</span></td></tr>
	</table>		</table>
	== Disease ==		== Disease ==
-	[~~[http~~://www.uniprot.org/uniprot/BRD4_HUMAN BRD4_HUMAN]] Note=A chromosomal aberration involving BRD4 is found in a rare, aggressive, and lethal carcinoma arising in midline organs of young people. Translocation t(15;19)(q14;p13) with NUT which produces a BRD4-NUT fusion protein.<ref>PMID:12543779</ref> <ref>PMID:11733348</ref>	+	[https://www.uniprot.org/uniprot/BRD4_HUMAN BRD4_HUMAN] Note=A chromosomal aberration involving BRD4 is found in a rare, aggressive, and lethal carcinoma arising in midline organs of young people. Translocation t(15;19)(q14;p13) with NUT which produces a BRD4-NUT fusion protein.<ref>PMID:12543779</ref> <ref>PMID:11733348</ref>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/BRD4_HUMAN BRD4_HUMAN]] Plays a role in a process governing chromosomal dynamics during mitosis (By similarity).	+	[https://www.uniprot.org/uniprot/BRD4_HUMAN BRD4_HUMAN] Plays a role in a process governing chromosomal dynamics during mitosis (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 21:
	</div>		</div>
	<div class="pdbe-citations 5luu" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5luu" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Bromodomain-containing protein 3D structures\|Bromodomain-containing protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
-	[[Category: ~~Arrowsmith, C H~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Bountra, C~~]]	+	[[Category: Arrowsmith CH]]
-	[[Category: ~~Delft, F von~~]]	+	[[Category: Bountra C]]
-	[[Category: Edwards, A]]	+	[[Category: Edwards A]]
-	[[Category: Filippakopoulos, P]]	+	[[Category: Filippakopoulos P]]
-	[[Category: Knapp, S]]	+	[[Category: Knapp S]]
-	[[Category: Picaud, S]]	+	[[Category: Picaud S]]
-	[[Category: ~~Structural genomic]]~~	+	[[Category: Von Delft F]]
-	~~[[Category: Bromodomain]]~~	+
-	~~[[Category: Complex]]~~	+
-	~~[[Category: Fragment]]~~	+
-	~~[[Category: Sgc]]~~	+
-	~~[[Category: Transcription~~]]	+

OCA at 07:43, 8 November 2017

OCA — Wed, 08 Nov 2017 07:43:00 GMT

←Older revision		Revision as of 07:43, 8 November 2017
Line 3:		Line 3:
	<StructureSection load='5luu' size='340' side='right' caption='[[5luu]], [[Resolution\|resolution]] 1.61Å' scene=''>		<StructureSection load='5luu' size='340' side='right' caption='[[5luu]], [[Resolution\|resolution]] 1.61Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5luu]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LUU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LUU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5luu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LUU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LUU FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=77X:1-(3-PHENYL-1,4,6,7-TETRAHYDROPYRAZOLO[4,3-C]PYRIDIN-5-YL)PROPAN-1-ONE'>77X</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=77X:1-(3-PHENYL-1,4,6,7-TETRAHYDROPYRAZOLO[4,3-C]PYRIDIN-5-YL)PROPAN-1-ONE'>77X</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">BRD4, HUNK1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5luu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5luu OCA], [http://pdbe.org/5luu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5luu RCSB], [http://www.ebi.ac.uk/pdbsum/5luu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5luu ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5luu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5luu OCA], [http://pdbe.org/5luu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5luu RCSB], [http://www.ebi.ac.uk/pdbsum/5luu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5luu ProSAT]</span></td></tr>
	</table>		</table>
Line 24:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
	[[Category: Arrowsmith, C H]]		[[Category: Arrowsmith, C H]]
	[[Category: Bountra, C]]		[[Category: Bountra, C]]

OCA at 08:38, 18 January 2017

OCA — Wed, 18 Jan 2017 08:38:25 GMT

←Older revision		Revision as of 08:38, 18 January 2017
Line 11:		Line 11:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/BRD4_HUMAN BRD4_HUMAN]] Plays a role in a process governing chromosomal dynamics during mitosis (By similarity).		[[http://www.uniprot.org/uniprot/BRD4_HUMAN BRD4_HUMAN]] Plays a role in a process governing chromosomal dynamics during mitosis (By similarity).
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The discovery of novel bromodomain inhibitors by fragment screening is complicated by the presence of dimethyl sulfoxide (DMSO), an acetyl-lysine mimetic, that can compromise the detection of low affinity fragments. We demonstrate surface plasmon resonance as a primary fragment screening approach for the discovery of novel bromodomain scaffolds, by describing a protocol to overcome the DMSO interference issue. We describe the discovery of several novel small molecules scaffolds that inhibit the bromodomains PCAF, BRD4, and CREBBP, representing canonical members of three out of the seven subfamilies of bromodomains. High-resolution crystal structures of the complexes of key fragments binding to BRD4(1), CREBBP, and PCAF were determined to provide binding mode data to aid the development of potent and selective inhibitors of PCAF, CREBBP, and BRD4.
		+
		+	Discovery of New Bromodomain Scaffolds by Biosensor Fragment Screening.,Navratilova I, Aristotelous T, Picaud S, Chaikuad A, Knapp S, Filappakopoulos P, Hopkins AL ACS Med Chem Lett. 2016 Sep 20;7(12):1213-1218. eCollection 2016 Dec 8. PMID:27994766<ref>PMID:27994766</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5luu" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 17:45, 19 October 2016

OCA — Wed, 19 Oct 2016 17:45:38 GMT

←Older revision		Revision as of 17:45, 19 October 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5luu ~~is ON HOLD~~	+	==Structure of the first bromodomain of BRD4 with a pyrazolo[4,3-c]pyridin fragment==
-		+	<StructureSection load='5luu' size='340' side='right' caption='[[5luu]], [[Resolution\|resolution]] 1.61Å' scene=''>
-	~~Authors~~: ~~Filippakopoulos, P~~.~~, Picaud, S~~.~~, Knapp, S~~., ~~von Delft~~, F., ~~Bountra~~, C., ~~Arrowsmith~~, C.H., ~~Edwards~~, A., ~~Structural Genomics Consortium (SGC)~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5luu]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LUU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LUU FirstGlance]. <br>
-	~~Description~~: ~~Structure of the first bromodomain of BRD4 with a pyrazolo~~[4,3-c]~~pyridin fragment~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=77X:1-(3-PHENYL-1,4,6,7-TETRAHYDROPYRAZOLO[4,3-C]PYRIDIN-5-YL)PROPAN-1-ONE'>77X</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5luu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5luu OCA], [http://pdbe.org/5luu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5luu RCSB], [http://www.ebi.ac.uk/pdbsum/5luu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5luu ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Picaud, S~~]]	+	</table>
-	[[Category: ~~Knapp~~, S]]	+	== Disease ==
		+	[[http://www.uniprot.org/uniprot/BRD4_HUMAN BRD4_HUMAN]] Note=A chromosomal aberration involving BRD4 is found in a rare, aggressive, and lethal carcinoma arising in midline organs of young people. Translocation t(15;19)(q14;p13) with NUT which produces a BRD4-NUT fusion protein.<ref>PMID:12543779</ref> <ref>PMID:11733348</ref>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/BRD4_HUMAN BRD4_HUMAN]] Plays a role in a process governing chromosomal dynamics during mitosis (By similarity).
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Arrowsmith, C H]]
	[[Category: Bountra, C]]		[[Category: Bountra, C]]
-	[[Category: ~~Arrowsmith~~, ~~C.H~~]]	+	[[Category: Delft, F von]]
-	[[Category: ~~Von Delft~~, F]]	+	[[Category: Edwards, A]]
	[[Category: Filippakopoulos, P]]		[[Category: Filippakopoulos, P]]
-	[[Category: Structural ~~Genomics Consortium (~~Sgc)]]	+	[[Category: Knapp, S]]
-	[[Category: ~~Edwards, A~~]]	+	[[Category: Picaud, S]]
		+	[[Category: Structural genomic]]
		+	[[Category: Bromodomain]]
		+	[[Category: Complex]]
		+	[[Category: Fragment]]
		+	[[Category: Sgc]]
		+	[[Category: Transcription]]

OCA: Protected "5luu" [edit=sysop:move=sysop]

OCA — Wed, 21 Sep 2016 11:51:07 GMT

Protected "5luu" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:51, 21 September 2016

OCA: New page: '''Unreleased structure''' The entry 5luu is ON HOLD Authors: Filippakopoulos, P., Picaud, S., Knapp, S., von Delft, F., Bountra, C., Arrowsmith, C.H., Edwards, A., Structural Genomics ...

OCA — Wed, 21 Sep 2016 11:51:06 GMT

New page: '''Unreleased structure''' The entry 5luu is ON HOLD Authors: Filippakopoulos, P., Picaud, S., Knapp, S., von Delft, F., Bountra, C., Arrowsmith, C.H., Edwards, A., Structural Genomics ...

New page

'''Unreleased structure'''

The entry 5luu is ON HOLD

Authors: Filippakopoulos, P., Picaud, S., Knapp, S., von Delft, F., Bountra, C., Arrowsmith, C.H., Edwards, A., Structural Genomics Consortium (SGC)

Description: Structure of the first bromodomain of BRD4 with a pyrazolo[4,3-c]pyridin fragment
[[Category: Unreleased Structures]]
[[Category: Picaud, S]]
[[Category: Knapp, S]]
[[Category: Bountra, C]]
[[Category: Arrowsmith, C.H]]
[[Category: Von Delft, F]]
[[Category: Filippakopoulos, P]]
[[Category: Structural Genomics Consortium (Sgc)]]
[[Category: Edwards, A]]