5lwg - Revision history

OCA at 18:52, 18 October 2023

OCA — Wed, 18 Oct 2023 18:52:39 GMT

←Older revision		Revision as of 18:52, 18 October 2023
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	<SX load='5lwg' size='340' side='right' viewer='molstar' caption='[[5lwg]], [[Resolution\|resolution]] 3.20Å' scene=''>		<SX load='5lwg' size='340' side='right' viewer='molstar' caption='[[5lwg]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lwg]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Israeli_acute_paralysis_virus Israeli acute paralysis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LWG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5LWG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lwg]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Israeli_acute_paralysis_virus Israeli acute paralysis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LWG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LWG FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5lwg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lwg OCA], [~~http~~://pdbe.org/5lwg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5lwg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5lwg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5lwg ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.2Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lwg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lwg OCA], [https://pdbe.org/5lwg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lwg RCSB], [https://www.ebi.ac.uk/pdbsum/5lwg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lwg ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/G0Z733_9VIRU G0Z733_9VIRU]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	[[Category: Israeli acute paralysis virus]]		[[Category: Israeli acute paralysis virus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Fuzik, T]]	+	[[Category: Fuzik T]]
-	[[Category: Mullapudi, E]]	+	[[Category: Mullapudi E]]
-	[[Category: Plevka, P]]	+	[[Category: Plevka P]]
-	[[Category: Pridal, A]]	+	[[Category: Pridal A]]
-	~~[[Category: Dicistroviridae]]~~	+
-	~~[[Category: Full particle]]~~	+
-	~~[[Category: Iapv]]~~	+
-	~~[[Category: Virus~~]]	+

OCA at 20:47, 10 April 2020

OCA — Fri, 10 Apr 2020 20:47:10 GMT

←Older revision		Revision as of 20:47, 10 April 2020
Line 3:		Line 3:
	<SX load='5lwg' size='340' side='right' viewer='molstar' caption='[[5lwg]], [[Resolution\|resolution]] 3.20Å' scene=''>		<SX load='5lwg' size='340' side='right' viewer='molstar' caption='[[5lwg]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lwg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Israeli_acute_paralysis_virus Israeli acute paralysis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LWG OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5LWG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lwg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Israeli_acute_paralysis_virus Israeli acute paralysis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LWG OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5LWG FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5lwg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lwg OCA], [http://pdbe.org/5lwg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lwg RCSB], [http://www.ebi.ac.uk/pdbsum/5lwg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lwg ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5lwg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lwg OCA], [http://pdbe.org/5lwg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lwg RCSB], [http://www.ebi.ac.uk/pdbsum/5lwg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lwg ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 19:00, 6 March 2020

OCA — Fri, 06 Mar 2020 19:00:48 GMT

←Older revision		Revision as of 19:00, 6 March 2020
Line 1:		Line 1:

	==Israeli acute paralysis virus heated to 63 degree - full particle==		==Israeli acute paralysis virus heated to 63 degree - full particle==
-	<~~StructureSection~~ load='5lwg' size='340' side='right'caption='[[5lwg]], [[Resolution\|resolution]] 3.20Å' scene=''>	+	<SX load='5lwg' size='340' side='right' viewer='molstar' caption='[[5lwg]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5lwg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Israeli_acute_paralysis_virus Israeli acute paralysis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LWG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LWG FirstGlance]. <br>		<table><tr><td colspan='2'>[[5lwg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Israeli_acute_paralysis_virus Israeli acute paralysis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LWG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LWG FirstGlance]. <br>
Line 18:		Line 18:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Israeli acute paralysis virus]]		[[Category: Israeli acute paralysis virus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 16:35, 11 December 2019

OCA — Wed, 11 Dec 2019 16:35:01 GMT

←Older revision		Revision as of 16:35, 11 December 2019
Line 1:		Line 1:

	==Israeli acute paralysis virus heated to 63 degree - full particle==		==Israeli acute paralysis virus heated to 63 degree - full particle==
-	<StructureSection load='5lwg' size='340' side='right' caption='[[5lwg]], [[Resolution\|resolution]] 3.20Å' scene=''>	+	<StructureSection load='5lwg' size='340' side='right'caption='[[5lwg]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5lwg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Israeli_acute_paralysis_virus Israeli acute paralysis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LWG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LWG FirstGlance]. <br>		<table><tr><td colspan='2'>[[5lwg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Israeli_acute_paralysis_virus Israeli acute paralysis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LWG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LWG FirstGlance]. <br>
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Israeli acute paralysis virus]]		[[Category: Israeli acute paralysis virus]]
		+	[[Category: Large Structures]]
	[[Category: Fuzik, T]]		[[Category: Fuzik, T]]
	[[Category: Mullapudi, E]]		[[Category: Mullapudi, E]]

OCA at 14:29, 22 December 2016

OCA — Thu, 22 Dec 2016 14:29:09 GMT

←Older revision		Revision as of 14:29, 22 December 2016
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	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lwg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lwg OCA], [http://pdbe.org/5lwg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lwg RCSB], [http://www.ebi.ac.uk/pdbsum/5lwg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lwg ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lwg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lwg OCA], [http://pdbe.org/5lwg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lwg RCSB], [http://www.ebi.ac.uk/pdbsum/5lwg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lwg ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Viruses from the family Dicistroviridae can cause substantial economic damage by infecting agriculturally important insects. Israeli acute bee paralysis virus (IAPV) causes honeybee colony collapse disorder in the United States. High-resolution molecular details of the genome delivery mechanism of dicistroviruses are unknown. Here we present a cryo-EM analysis of IAPV virions induced to release their genomes in vitro We determined structures of full IAPV virions primed to release their genomes to a resolution of 3.3 A and of empty capsids to a resolution of 3.9 A. We show that IAPV does not form expanded A particles before the genome release, as is the case in the related enteroviruses from the family Picornaviridae The structural changes observed in the empty IAPV particles include the detachment of the VP4 minor capsid proteins from the inner face of the capsid and partial loss of the structure of the N-terminal arms of the VP2 capsid proteins. Unlike in many picornaviruses, the empty particles of IAPV are not expanded, relative to the native virions, and do not contain pores in their capsids that might serve as channels for the genome release. Therefore, re-arrangement of a unique region of the capsid is probably required for IAPV genome release. IMPORTANCE: Honeybee populations in Europe and North America are declining due to pressure from pathogens including viruses. Israeli acute bee paralysis virus from the family Dicistroviridae causes honeybee colony collapse disorder in the United States. The delivery of virus genomes into host cells is necessary for the initiation of infection. Here we present structural cryo-electron microscopy analysis of IAPV particles induced to release their genomes. We show that the genome release is not preceded by an expansion of IAPV virions, as is the case in the related picornaviruses that infect vertebrates. Furthermore, minor capsid proteins detach from the capsid upon the genome release. The genome leaves behind empty particles that have compact protein shells.
		+
		+	Cryo-EM study of genome release of dicistrovirus Israeli acute bee paralysis virus.,Mullapudi E, Fuzik T, Pridal A, Plevka P J Virol. 2016 Dec 7. pii: JVI.02060-16. PMID:27928006<ref>PMID:27928006</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5lwg" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 18:36, 10 December 2016

OCA — Sat, 10 Dec 2016 18:36:46 GMT

←Older revision		Revision as of 18:36, 10 December 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5lwg is ~~ON HOLD~~	+	==Israeli acute paralysis virus heated to 63 degree - full particle==
-		+	<StructureSection load='5lwg' size='340' side='right' caption='[[5lwg]], [[Resolution\|resolution]] 3.20Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5lwg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Israeli_acute_paralysis_virus Israeli acute paralysis virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LWG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LWG FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lwg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lwg OCA], [http://pdbe.org/5lwg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lwg RCSB], [http://www.ebi.ac.uk/pdbsum/5lwg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lwg ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Israeli acute paralysis virus]]
		+	[[Category: Fuzik, T]]
		+	[[Category: Mullapudi, E]]
		+	[[Category: Plevka, P]]
		+	[[Category: Pridal, A]]
		+	[[Category: Dicistroviridae]]
		+	[[Category: Full particle]]
		+	[[Category: Iapv]]
		+	[[Category: Virus]]

OCA: Protected "5lwg" [edit=sysop:move=sysop]

OCA — Mon, 03 Oct 2016 14:46:54 GMT

Protected "5lwg" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:46, 3 October 2016

OCA: New page: '''Unreleased structure''' The entry 5lwg is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Mon, 03 Oct 2016 14:46:53 GMT

New page: '''Unreleased structure''' The entry 5lwg is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5lwg is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]