5lz0 - Revision history

OCA at 10:57, 25 October 2023

OCA — Wed, 25 Oct 2023 10:57:01 GMT

←Older revision		Revision as of 10:57, 25 October 2023
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	<StructureSection load='5lz0' size='340' side='right'caption='[[5lz0]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='5lz0' size='340' side='right'caption='[[5lz0]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lz0]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Camelus_glama Camelus~~ glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LZ0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5LZ0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lz0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lama_glama Lama glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LZ0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LZ0 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5lz0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lz0 OCA], [~~http~~://pdbe.org/5lz0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5lz0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5lz0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5lz0 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lz0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lz0 OCA], [https://pdbe.org/5lz0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lz0 RCSB], [https://www.ebi.ac.uk/pdbsum/5lz0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lz0 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Camelus~~ glama]]	+	[[Category: Lama glama]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Duhoo, Y]]	+	[[Category: Duhoo Y]]
-	[[Category: Leone, P]]	+	[[Category: Leone P]]
-	[[Category: Roussel, A]]	+	[[Category: Roussel A]]
-	~~[[Category: Immune system]]~~	+
-	~~[[Category: Nanobody]]~~	+
-	~~[[Category: Porphyromonas gingivali~~]]	+

OCA at 10:55, 12 August 2020

OCA — Wed, 12 Aug 2020 10:55:56 GMT

←Older revision		Revision as of 10:55, 12 August 2020
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	==Llama nanobody PorM_01==		==Llama nanobody PorM_01==
-	<StructureSection load='5lz0' size='340' side='right' caption='[[5lz0]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='5lz0' size='340' side='right'caption='[[5lz0]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lz0]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LZ0 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5LZ0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lz0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Camelus_glama Camelus glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LZ0 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5LZ0 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5lz0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lz0 OCA], [http://pdbe.org/5lz0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lz0 RCSB], [http://www.ebi.ac.uk/pdbsum/5lz0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lz0 ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5lz0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lz0 OCA], [http://pdbe.org/5lz0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lz0 RCSB], [http://www.ebi.ac.uk/pdbsum/5lz0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lz0 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Camelus glama]]
		+	[[Category: Large Structures]]
	[[Category: Duhoo, Y]]		[[Category: Duhoo, Y]]
	[[Category: Leone, P]]		[[Category: Leone, P]]

OCA at 09:07, 17 May 2017

OCA — Wed, 17 May 2017 09:07:29 GMT

←Older revision		Revision as of 09:07, 17 May 2017
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	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lz0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lz0 OCA], [http://pdbe.org/5lz0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lz0 RCSB], [http://www.ebi.ac.uk/pdbsum/5lz0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lz0 ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lz0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lz0 OCA], [http://pdbe.org/5lz0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lz0 RCSB], [http://www.ebi.ac.uk/pdbsum/5lz0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lz0 ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	PorM is a membrane protein that is involved in the assembly of the type IX secretion system (T9SS) in Porphyromonas gingivalis, a major bacterial pathogen that is responsible for periodontal disease in humans. In the context of structural studies of PorM to better understand T9SS assembly, four camelid nanobodies were selected, produced and purified, and their specific interaction with the N-terminal or C-terminal part of the periplasmic domain of PorM was investigated. Diffracting crystals were also obtained, and the structures of the four nanobodies were solved by molecular replacement. Furthermore, two nanobodies were used as crystallization chaperones and turned out to be valuable tools in the structure-determination process of the periplasmic domain of PorM.
		+
		+	Camelid nanobodies used as crystallization chaperones for different constructs of PorM, a component of the type IX secretion system from Porphyromonas gingivalis.,Duhoo Y, Roche J, Trinh TTN, Desmyter A, Gaubert A, Kellenberger C, Cambillau C, Roussel A, Leone P Acta Crystallogr F Struct Biol Commun. 2017 May 1;73(Pt 5):286-293. doi:, 10.1107/S2053230X17005969. Epub 2017 Apr 26. PMID:28471361<ref>PMID:28471361</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5lz0" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 13:09, 4 May 2017

OCA — Thu, 04 May 2017 13:09:31 GMT

←Older revision		Revision as of 13:09, 4 May 2017
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-	'''Unreleased structure'''

-	~~The entry~~ 5lz0 ~~is ON HOLD until Paper Publication~~	+	==Llama nanobody PorM_01==
-		+	<StructureSection load='5lz0' size='340' side='right' caption='[[5lz0]], [[Resolution\|resolution]] 1.60Å' scene=''>
-	~~Authors~~: ~~Duhoo~~, Y., ~~Leone~~, P., ~~Roussel~~, A.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5lz0]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LZ0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LZ0 FirstGlance]. <br>
-	~~Description: Llama nanobody PorM_01~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lz0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lz0 OCA], [http://pdbe.org/5lz0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lz0 RCSB], [http://www.ebi.ac.uk/pdbsum/5lz0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lz0 ProSAT]</span></td></tr>
-	~~[[Category: Unreleased Structures]]~~	+	</table>
		+	__TOC__
		+	</StructureSection>
	[[Category: Duhoo, Y]]		[[Category: Duhoo, Y]]
		+	[[Category: Leone, P]]
	[[Category: Roussel, A]]		[[Category: Roussel, A]]
-	[[Category: ~~Leone, P~~]]	+	[[Category: Immune system]]
		+	[[Category: Nanobody]]
		+	[[Category: Porphyromonas gingivali]]

OCA at 09:25, 27 April 2017

OCA — Thu, 27 Apr 2017 09:25:34 GMT

←Older revision		Revision as of 09:25, 27 April 2017
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5lz0 is ON HOLD	+	The entry 5lz0 is ON HOLD until Paper Publication

	Authors: Duhoo, Y., Leone, P., Roussel, A.		Authors: Duhoo, Y., Leone, P., Roussel, A.

OCA at 10:57, 9 March 2017

OCA — Thu, 09 Mar 2017 10:57:54 GMT

←Older revision		Revision as of 10:57, 9 March 2017
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	Description: Llama nanobody PorM_01		Description: Llama nanobody PorM_01
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Roussel, A]]
	[[Category: Duhoo, Y]]		[[Category: Duhoo, Y]]
		+	[[Category: Roussel, A]]
	[[Category: Leone, P]]		[[Category: Leone, P]]

OCA at 16:14, 9 December 2016

OCA — Fri, 09 Dec 2016 16:14:27 GMT

←Older revision		Revision as of 16:14, 9 December 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5lz0 is ON HOLD ~~until Paper Publication~~	+	The entry 5lz0 is ON HOLD

	Authors: Duhoo, Y., Leone, P., Roussel, A.		Authors: Duhoo, Y., Leone, P., Roussel, A.

OCA at 16:12, 26 October 2016

OCA — Wed, 26 Oct 2016 16:12:21 GMT

←Older revision		Revision as of 16:12, 26 October 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5lz0 is ON HOLD	+	The entry 5lz0 is ON HOLD until Paper Publication

	Authors: Duhoo, Y., Leone, P., Roussel, A.		Authors: Duhoo, Y., Leone, P., Roussel, A.

-	Description: ~~PorM~~ nanobody	+	Description: Llama nanobody PorM_01
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Roussel, A]]		[[Category: Roussel, A]]
	[[Category: Duhoo, Y]]		[[Category: Duhoo, Y]]
	[[Category: Leone, P]]		[[Category: Leone, P]]

OCA: Protected "5lz0" [edit=sysop:move=sysop]

OCA — Wed, 05 Oct 2016 19:23:23 GMT

Protected "5lz0" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:23, 5 October 2016

OCA: New page: '''Unreleased structure''' The entry 5lz0 is ON HOLD Authors: Duhoo, Y., Leone, P., Roussel, A. Description: PorM nanobody Category: Unreleased Structures Category: Roussel, A ...

OCA — Wed, 05 Oct 2016 19:23:22 GMT

New page: '''Unreleased structure''' The entry 5lz0 is ON HOLD Authors: Duhoo, Y., Leone, P., Roussel, A. Description: PorM nanobody Category: Unreleased Structures Category: Roussel, A ...

New page

'''Unreleased structure'''

The entry 5lz0 is ON HOLD

Authors: Duhoo, Y., Leone, P., Roussel, A.

Description: PorM nanobody
[[Category: Unreleased Structures]]
[[Category: Roussel, A]]
[[Category: Duhoo, Y]]
[[Category: Leone, P]]