5m59 - Revision history

OCA at 18:26, 1 November 2023

OCA — Wed, 01 Nov 2023 18:26:27 GMT

←Older revision		Revision as of 18:26, 1 November 2023
Line 1:		Line 1:

	==Crystal structure of Chaetomium thermophilum Brr2 helicase core in complex with Prp8 Jab1 domain==		==Crystal structure of Chaetomium thermophilum Brr2 helicase core in complex with Prp8 Jab1 domain==
-	<StructureSection load='5m59' size='340' side='right' caption='[[5m59]], [[Resolution\|resolution]] 3.20Å' scene=''>	+	<StructureSection load='5m59' size='340' side='right'caption='[[5m59]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5m59]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Cbs_144.50 Cbs 144.50~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M59 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5M59 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5m59]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Chaetomium_thermophilum Chaetomium thermophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M59 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5M59 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=ACT:ACETATE+ION'>ACT</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.2Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~CTHT_0071250 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=209285 CBS 144.50]), CTHT_0009470 ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=209285 CBS 144.50])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5m59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m59 OCA], [~~http~~://pdbe.org/5m59 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5m59 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5m59 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5m59 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5m59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m59 OCA], [https://pdbe.org/5m59 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5m59 RCSB], [https://www.ebi.ac.uk/pdbsum/5m59 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5m59 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/G0SFL3_CHATD G0SFL3_CHATD]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Cbs 144 50~~]]	+	[[Category: Chaetomium thermophilum]]
-	[[Category: Absmeier, E]]	+	[[Category: Large Structures]]
-	[[Category: Becke, C]]	+	[[Category: Absmeier E]]
-	[[Category: Santos~~, K F~~]]	+	[[Category: Becke C]]
-	[[Category: Wahl~~, M C~~]]	+	[[Category: Santos KF]]
-	[[Category: Wollenhaupt, J]]	+	[[Category: Wahl MC]]
-	~~[[Category: Brr2]]~~	+	[[Category: Wollenhaupt J]]
-	~~[[Category: Pre-mrna splicing]]~~	+
-	~~[[Category: Prp8]]~~	+
-	~~[[Category: Rna-helicase]]~~	+
-	~~[[Category: Splicing~~]]	+

OCA at 06:09, 8 March 2018

OCA — Thu, 08 Mar 2018 06:09:12 GMT

←Older revision		Revision as of 06:09, 8 March 2018
Line 3:		Line 3:
	<StructureSection load='5m59' size='340' side='right' caption='[[5m59]], [[Resolution\|resolution]] 3.20Å' scene=''>		<StructureSection load='5m59' size='340' side='right' caption='[[5m59]], [[Resolution\|resolution]] 3.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5m59]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M59 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5M59 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5m59]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Cbs_144.50 Cbs 144.50]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M59 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5M59 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CTHT_0071250 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=209285 CBS 144.50]), CTHT_0009470 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=209285 CBS 144.50])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5m59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m59 OCA], [http://pdbe.org/5m59 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5m59 RCSB], [http://www.ebi.ac.uk/pdbsum/5m59 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5m59 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5m59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m59 OCA], [http://pdbe.org/5m59 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5m59 RCSB], [http://www.ebi.ac.uk/pdbsum/5m59 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5m59 ProSAT]</span></td></tr>
	</table>		</table>
Line 20:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Cbs 144 50]]
	[[Category: Absmeier, E]]		[[Category: Absmeier, E]]
	[[Category: Becke, C]]		[[Category: Becke, C]]

OCA at 21:30, 22 December 2016

OCA — Thu, 22 Dec 2016 21:30:57 GMT

←Older revision		Revision as of 21:30, 22 December 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5m59 is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of Chaetomium thermophilum Brr2 helicase core in complex with Prp8 Jab1 domain==
		+	<StructureSection load='5m59' size='340' side='right' caption='[[5m59]], [[Resolution\|resolution]] 3.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5m59]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M59 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5M59 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5m59 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m59 OCA], [http://pdbe.org/5m59 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5m59 RCSB], [http://www.ebi.ac.uk/pdbsum/5m59 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5m59 ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	RNA helicase Brr2 is implicated in multiple phases of pre-mRNA splicing and thus requires tight regulation. Brr2 can be auto-inhibited via a large N-terminal region folding back onto its helicase core and auto-activated by a catalytically inactive C-terminal helicase cassette. Furthermore, it can be regulated in trans by the Jab1 domain of the Prp8 protein, which can inhibit Brr2 by intermittently inserting a C-terminal tail in the enzyme's RNA-binding tunnel or activate the helicase after removal of this tail. Presently it is unclear, whether these regulatory mechanisms functionally interact and to which extent they are evolutionarily conserved. Here, we report crystal structures of Saccharomyces cerevisiae and Chaetomium thermophilum Brr2-Jab1 complexes, demonstrating that Jab1-based inhibition of Brr2 presumably takes effect in all eukaryotes but is implemented via organism-specific molecular contacts. Moreover, the structures show that Brr2 auto-inhibition can act in concert with Jab1-mediated inhibition, and suggest that the N-terminal region influences how the Jab1 C-terminal tail interacts at the RNA-binding tunnel. Systematic RNA binding and unwinding studies revealed that the N-terminal region and the Jab1 C-terminal tail specifically interfere with accommodation of double-stranded and single-stranded regions of an RNA substrate, respectively, mutually reinforcing each other. Additionally, such analyses show that regulation based on the N-terminal region requires the presence of the inactive C-terminal helicase cassette. Together, our results outline an intricate system of regulatory mechanisms, which control Brr2 activities during snRNP assembly and splicing.

-	~~Authors~~:	+	Interplay of cis- and trans-regulatory mechanisms in the spliceosomal RNA helicase Brr2.,Absmeier E, Becke C, Wollenhaupt J, Santos KF, Wahl MC Cell Cycle. 2016 Nov 23:0. PMID:27880071<ref>PMID:27880071</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5m59" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Absmeier, E]]
		+	[[Category: Becke, C]]
		+	[[Category: Santos, K F]]
		+	[[Category: Wahl, M C]]
		+	[[Category: Wollenhaupt, J]]
		+	[[Category: Brr2]]
		+	[[Category: Pre-mrna splicing]]
		+	[[Category: Prp8]]
		+	[[Category: Rna-helicase]]
		+	[[Category: Splicing]]

OCA at 15:54, 15 December 2016

OCA — Thu, 15 Dec 2016 15:54:02 GMT

←Older revision		Revision as of 15:54, 15 December 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5m59 is ON HOLD	+	The entry 5m59 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5m59" [edit=sysop:move=sysop]

OCA — Wed, 26 Oct 2016 16:26:04 GMT

Protected "5m59" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:26, 26 October 2016

OCA: New page: '''Unreleased structure''' The entry 5m59 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 26 Oct 2016 16:26:03 GMT

New page: '''Unreleased structure''' The entry 5m59 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5m59 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]