5mia - Revision history

OCA at 18:44, 1 November 2023

OCA — Wed, 01 Nov 2023 18:44:29 GMT

←Older revision		Revision as of 18:44, 1 November 2023
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	<StructureSection load='5mia' size='340' side='right'caption='[[5mia]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='5mia' size='340' side='right'caption='[[5mia]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5mia]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Steccherinum_murashkinskyi Steccherinum murashkinskyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MIA OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5MIA FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5mia]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Steccherinum_murashkinskyi Steccherinum murashkinskyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MIA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5MIA FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.35Å</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Laccase Laccase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.3.2 1.10.3.2] </span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5mia FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mia OCA], [~~http~~://pdbe.org/5mia PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5mia RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5mia PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5mia ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5mia FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mia OCA], [https://pdbe.org/5mia PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5mia RCSB], [https://www.ebi.ac.uk/pdbsum/5mia PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5mia ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/I1VE66_9APHY I1VE66_9APHY]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Laccase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Steccherinum murashkinskyi]]		[[Category: Steccherinum murashkinskyi]]
-	[[Category: Fedorova~~, T V~~]]	+	[[Category: Fedorova TV]]
-	[[Category: Gavryushov, S]]	+	[[Category: Gavryushov S]]
-	[[Category: Glazunova~~, O A~~]]	+	[[Category: Glazunova OA]]
-	[[Category: Polyakov~~, K M~~]]	+	[[Category: Polyakov KM]]
-	[[Category: Popov~~, A N]]~~	+	[[Category: Popov AN]]
-	~~[[Category: Complex with molecular oxygen]]~~	+
-	~~[[Category: Multi copper oxidase]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 12:25, 17 July 2019

OCA — Wed, 17 Jul 2019 12:25:52 GMT

←Older revision		Revision as of 12:25, 17 July 2019
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	==The study of the X-ray induced enzymatic reduction of molecular oxygen to water for laccase from Steccherinum murashkinskyi.The 11-th structure of the series with total exposition time 303 min.==		==The study of the X-ray induced enzymatic reduction of molecular oxygen to water for laccase from Steccherinum murashkinskyi.The 11-th structure of the series with total exposition time 303 min.==
-	<StructureSection load='5mia' size='340' side='right' caption='[[5mia]], [[Resolution\|resolution]] 1.35Å' scene=''>	+	<StructureSection load='5mia' size='340' side='right'caption='[[5mia]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5mia]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Steccherinum_murashkinskyi Steccherinum murashkinskyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MIA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5MIA FirstGlance]. <br>		<table><tr><td colspan='2'>[[5mia]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Steccherinum_murashkinskyi Steccherinum murashkinskyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MIA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5MIA FirstGlance]. <br>
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	</div>		</div>
	<div class="pdbe-citations 5mia" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5mia" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Laccase 3D structures\|Laccase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Laccase]]		[[Category: Laccase]]
		+	[[Category: Large Structures]]
	[[Category: Steccherinum murashkinskyi]]		[[Category: Steccherinum murashkinskyi]]
	[[Category: Fedorova, T V]]		[[Category: Fedorova, T V]]

OCA at 07:22, 24 May 2017

OCA — Wed, 24 May 2017 07:22:16 GMT

←Older revision		Revision as of 07:22, 24 May 2017
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5mia FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mia OCA], [http://pdbe.org/5mia PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5mia RCSB], [http://www.ebi.ac.uk/pdbsum/5mia PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5mia ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5mia FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mia OCA], [http://pdbe.org/5mia PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5mia RCSB], [http://www.ebi.ac.uk/pdbsum/5mia PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5mia ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The laccase from Steccherinum murashkinskyi is a member of the large family of multicopper oxidases that catalyze the oxidation of a wide range of organic and inorganic substrates, accompanied by the reduction of dioxygen to water. The reducing properties of X-ray radiation and the high quality of the laccase crystals allow the study of the catalytic reduction of dioxygen to water directly in a crystal. A series of diffraction data sets with increasing absorbed radiation dose were collected from a single crystal of Steccherinum murashkinskyi laccase at 1.35 A resolution. Changes in the active-site structure associated with the reduction of molecular oxygen to water on increasing the absorbed dose of ionizing radiation were detected. The structures in the series are mixtures of different states of the enzyme-substrate complex. Nevertheless, it was possible to interpret these structures as complexes of various oxygen ligands with copper ions in different oxidation states. The results allowed the mechanism of oxygen reduction catalyzed by laccases to be refined.
		+
		+	Structural study of the X-ray-induced enzymatic reduction of molecular oxygen to water by Steccherinum murashkinskyi laccase: insights into the reaction mechanism.,Polyakov KM, Gavryushov S, Ivanova S, Fedorova TV, Glazunova OA, Popov AN, Koroleva OV Acta Crystallogr D Struct Biol. 2017 May 1;73(Pt 5):388-401. doi:, 10.1107/S2059798317003667. Epub 2017 Apr 26. PMID:28471364<ref>PMID:28471364</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5mia" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 12:59, 10 May 2017

OCA — Wed, 10 May 2017 12:59:09 GMT

←Older revision		Revision as of 12:59, 10 May 2017
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-	'''Unreleased structure'''

-	~~The entry 5mia is ON HOLD until Paper Publication~~	+	==The study of the X-ray induced enzymatic reduction of molecular oxygen to water for laccase from Steccherinum murashkinskyi.The 11-th structure of the series with total exposition time 303 min.==
-		+	<StructureSection load='5mia' size='340' side='right' caption='[[5mia]], [[Resolution\|resolution]] 1.35Å' scene=''>
-	~~Authors: Polyakov, K.M., Gavryushov, S., Fedorova, T.V., Glazunova, O.A., Popov, A.N.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5mia]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Steccherinum_murashkinskyi Steccherinum murashkinskyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MIA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5MIA FirstGlance]. <br>
-	~~Description:~~ The study of the X-ray induced enzymatic reduction of molecular oxygen to water for laccase from Steccherinum murashkinskyi.The 11-th structure of the series with total exposition time 303 min.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Laccase Laccase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.3.2 1.10.3.2] </span></td></tr>
-	[[~~Category~~: ~~Fedorova~~, T.V]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5mia FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mia OCA], [http://pdbe.org/5mia PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5mia RCSB], [http://www.ebi.ac.uk/pdbsum/5mia PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5mia ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Popov~~, A.N]]	+	</table>
-	[[Category: ~~Glazunova~~, ~~O.A~~]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Laccase]]
		+	[[Category: Steccherinum murashkinskyi]]
		+	[[Category: Fedorova, T V]]
	[[Category: Gavryushov, S]]		[[Category: Gavryushov, S]]
-	[[Category: Polyakov, K.M]]	+	[[Category: Glazunova, O A]]
		+	[[Category: Polyakov, K M]]
		+	[[Category: Popov, A N]]
		+	[[Category: Complex with molecular oxygen]]
		+	[[Category: Multi copper oxidase]]
		+	[[Category: Oxidoreductase]]

OCA at 11:20, 9 March 2017

OCA — Thu, 09 Mar 2017 11:20:07 GMT

←Older revision		Revision as of 11:20, 9 March 2017
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	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Fedorova, T.V]]		[[Category: Fedorova, T.V]]
-	[[Category: Gavryushov, S]]
	[[Category: Popov, A.N]]		[[Category: Popov, A.N]]
	[[Category: Glazunova, O.A]]		[[Category: Glazunova, O.A]]
		+	[[Category: Gavryushov, S]]
	[[Category: Polyakov, K.M]]		[[Category: Polyakov, K.M]]

OCA at 16:19, 15 December 2016

OCA — Thu, 15 Dec 2016 16:19:24 GMT

←Older revision		Revision as of 16:19, 15 December 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5mia is ON HOLD	+	The entry 5mia is ON HOLD until Paper Publication

	Authors: Polyakov, K.M., Gavryushov, S., Fedorova, T.V., Glazunova, O.A., Popov, A.N.		Authors: Polyakov, K.M., Gavryushov, S., Fedorova, T.V., Glazunova, O.A., Popov, A.N.

OCA: Protected "5mia" [edit=sysop:move=sysop]

OCA — Fri, 09 Dec 2016 16:54:17 GMT

Protected "5mia" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:54, 9 December 2016

OCA: New page: '''Unreleased structure''' The entry 5mia is ON HOLD Authors: Polyakov, K.M., Gavryushov, S., Fedorova, T.V., Glazunova, O.A., Popov, A.N. Description: The study of the X-ray induced e...

OCA — Fri, 09 Dec 2016 16:54:16 GMT

New page: '''Unreleased structure''' The entry 5mia is ON HOLD Authors: Polyakov, K.M., Gavryushov, S., Fedorova, T.V., Glazunova, O.A., Popov, A.N. Description: The study of the X-ray induced e...

New page

'''Unreleased structure'''

The entry 5mia is ON HOLD

Authors: Polyakov, K.M., Gavryushov, S., Fedorova, T.V., Glazunova, O.A., Popov, A.N.

Description: The study of the X-ray induced enzymatic reduction of molecular oxygen to water for laccase from Steccherinum murashkinskyi.The 11-th structure of the series with total exposition time 303 min.
[[Category: Unreleased Structures]]
[[Category: Fedorova, T.V]]
[[Category: Gavryushov, S]]
[[Category: Popov, A.N]]
[[Category: Glazunova, O.A]]
[[Category: Polyakov, K.M]]