5n0n - Revision history

OCA at 17:55, 8 November 2023

OCA — Wed, 08 Nov 2023 17:55:55 GMT

←Older revision		Revision as of 17:55, 8 November 2023
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	<StructureSection load='5n0n' size='340' side='right'caption='[[5n0n]], [[Resolution\|resolution]] 1.76Å' scene=''>		<StructureSection load='5n0n' size='340' side='right'caption='[[5n0n]], [[Resolution\|resolution]] 1.76Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5n0n]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Jack_o'lantern Jack o'lantern~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N0N OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5N0N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5n0n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Omphalotus_olearius Omphalotus olearius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N0N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5N0N FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDT:{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC+ACID'>EDT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=~~SAH~~:S-~~ADENOSYL-L-HOMOCYSTEINE~~'>~~SAH~~</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.76Å</td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~CSO~~:S-~~HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=MVA:N~~-~~METHYLVALINE~~'>~~MVA~~</scene></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=EDT:{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC+ACID'>EDT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MVA:N-METHYLVALINE'>MVA</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5n0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5n0n OCA], [~~http~~://pdbe.org/5n0n PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5n0n RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5n0n PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5n0n ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5n0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5n0n OCA], [https://pdbe.org/5n0n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5n0n RCSB], [https://www.ebi.ac.uk/pdbsum/5n0n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5n0n ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A2R2JFH4_OMPOL A0A2R2JFH4_OMPOL]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Jack o'lantern]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Naismith, J H~~]]	+	[[Category: Omphalotus olearius]]
-	[[Category: ~~Song, H~~]]	+	[[Category: Naismith JH]]
-	[[Category: ~~Methyltransferase]]~~	+	[[Category: Song H]]
-	~~[[Category: Transferase~~]]	+

OCA at 06:02, 12 June 2019

OCA — Wed, 12 Jun 2019 06:02:43 GMT

←Older revision		Revision as of 06:02, 12 June 2019
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	==Crystal structure of OphA-DeltaC6 mutant Y63F in complex with SAM==		==Crystal structure of OphA-DeltaC6 mutant Y63F in complex with SAM==
-	<StructureSection load='5n0n' size='340' side='right' caption='[[5n0n]], [[Resolution\|resolution]] 1.76Å' scene=''>	+	<StructureSection load='5n0n' size='340' side='right'caption='[[5n0n]], [[Resolution\|resolution]] 1.76Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5n0n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Jack_o'lantern Jack o'lantern]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N0N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5N0N FirstGlance]. <br>		<table><tr><td colspan='2'>[[5n0n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Jack_o'lantern Jack o'lantern]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N0N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5N0N FirstGlance]. <br>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Jack o'lantern]]		[[Category: Jack o'lantern]]
		+	[[Category: Large Structures]]
	[[Category: Naismith, J H]]		[[Category: Naismith, J H]]
-	[[Category: ~~SONG~~, H]]	+	[[Category: Song, H]]
	[[Category: Methyltransferase]]		[[Category: Methyltransferase]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 20:05, 19 September 2018

OCA — Wed, 19 Sep 2018 20:05:35 GMT

←Older revision		Revision as of 20:05, 19 September 2018
Line 3:		Line 3:
	<StructureSection load='5n0n' size='340' side='right' caption='[[5n0n]], [[Resolution\|resolution]] 1.76Å' scene=''>		<StructureSection load='5n0n' size='340' side='right' caption='[[5n0n]], [[Resolution\|resolution]] 1.76Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5n0n]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N0N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5N0N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5n0n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Jack_o'lantern Jack o'lantern]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N0N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5N0N FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDT:{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC+ACID'>EDT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDT:{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC+ACID'>EDT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=MVA:N-METHYLVALINE'>MVA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=MVA:N-METHYLVALINE'>MVA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5n0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5n0n OCA], [http://pdbe.org/5n0n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5n0n RCSB], [http://www.ebi.ac.uk/pdbsum/5n0n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5n0n ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5n0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5n0n OCA], [http://pdbe.org/5n0n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5n0n RCSB], [http://www.ebi.ac.uk/pdbsum/5n0n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5n0n ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The peptide bond, the defining feature of proteins, governs peptide chemistry by abolishing nucleophilicity of the nitrogen. This and the planarity of the peptide bond arise from the delocalization of the lone pair of electrons on the nitrogen atom into the adjacent carbonyl. While chemical methylation of an amide bond uses a strong base to generate the imidate, OphA, the precursor protein of the fungal peptide macrocycle omphalotin A, self-hypermethylates amides at pH 7 using S-adenosyl methionine (SAM) as cofactor. The structure of OphA reveals a complex catenane-like arrangement in which the peptide substrate is clamped with its amide nitrogen aligned for nucleophilic attack on the methyl group of SAM. Biochemical data and computational modeling suggest a base-catalyzed reaction with the protein stabilizing the reaction intermediate. Backbone N-methylation of peptides enhances their protease resistance and membrane permeability, a property that holds promise for applications to medicinal chemistry.
		+
		+	A molecular mechanism for the enzymatic methylation of nitrogen atoms within peptide bonds.,Song H, van der Velden NS, Shiran SL, Bleiziffer P, Zach C, Sieber R, Imani AS, Krausbeck F, Aebi M, Freeman MF, Riniker S, Kunzler M, Naismith JH Sci Adv. 2018 Aug 24;4(8):eaat2720. doi: 10.1126/sciadv.aat2720. eCollection 2018, Aug. PMID:30151425<ref>PMID:30151425</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5n0n" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Jack o'lantern]]
	[[Category: Naismith, J H]]		[[Category: Naismith, J H]]
	[[Category: SONG, H]]		[[Category: SONG, H]]
	[[Category: Methyltransferase]]		[[Category: Methyltransferase]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 06:23, 15 February 2018

OCA — Thu, 15 Feb 2018 06:23:06 GMT

←Older revision		Revision as of 06:23, 15 February 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5n0n is ~~ON HOLD until Paper Publication~~	+	==Crystal structure of OphA-DeltaC6 mutant Y63F in complex with SAM==
-		+	<StructureSection load='5n0n' size='340' side='right' caption='[[5n0n]], [[Resolution\|resolution]] 1.76Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5n0n]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N0N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5N0N FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDT:{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC+ACID'>EDT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=MVA:N-METHYLVALINE'>MVA</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5n0n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5n0n OCA], [http://pdbe.org/5n0n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5n0n RCSB], [http://www.ebi.ac.uk/pdbsum/5n0n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5n0n ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Naismith, J H]]
		+	[[Category: SONG, H]]
		+	[[Category: Methyltransferase]]
		+	[[Category: Transferase]]

OCA: Protected "5n0n" [edit=sysop:move=sysop]

OCA — Thu, 09 Mar 2017 11:52:54 GMT

Protected "5n0n" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:52, 9 March 2017

OCA: New page: '''Unreleased structure''' The entry 5n0n is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

OCA — Thu, 09 Mar 2017 11:52:52 GMT

New page: '''Unreleased structure''' The entry 5n0n is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5n0n is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]