5n16 - Revision history

OCA at 17:56, 8 November 2023

OCA — Wed, 08 Nov 2023 17:56:24 GMT

←Older revision		Revision as of 17:56, 8 November 2023
Line 3:		Line 3:
	<StructureSection load='5n16' size='340' side='right'caption='[[5n16]], [[Resolution\|resolution]] 1.76Å' scene=''>		<StructureSection load='5n16' size='340' side='right'caption='[[5n16]], [[Resolution\|resolution]] 1.76Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5n16]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N16 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5N16 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5n16]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Candida_albicans Candida albicans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N16 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5N16 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8FN:5-cyclopropyl-2-(5-pyrazin-2-yl-1,2,4-oxadiazol-3-yl)benzo[b][1,4]benzothiazepin-6-one'>8FN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.76Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5n16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5n16 OCA], [~~http~~://pdbe.org/5n16 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5n16 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5n16 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5n16 ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8FN:5-cyclopropyl-2-(5-pyrazin-2-yl-1,2,4-oxadiazol-3-yl)benzo[b][1,4]benzothiazepin-6-one'>8FN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5n16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5n16 OCA], [https://pdbe.org/5n16 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5n16 RCSB], [https://www.ebi.ac.uk/pdbsum/5n16 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5n16 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/BDF1_CANAL BDF1_CANAL]] Transcription factor involved in the expression of a broad class of genes including snRNAs. Required for sporulation and DNA-damage repair. Prevents the spreading of SIR silencing at telomeres and protects histone H4, but not H3, from deacetylation (By similarity).	+	[https://www.uniprot.org/uniprot/BDF1_CANAL BDF1_CANAL] Transcription factor involved in the expression of a broad class of genes including snRNAs. Required for sporulation and DNA-damage repair. Prevents the spreading of SIR silencing at telomeres and protects histone H4, but not H3, from deacetylation (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Candida albicans]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Champleboux, M]]	+	[[Category: Champleboux M]]
-	[[Category: Chauvel, M]]	+	[[Category: Chauvel M]]
-	[[Category: Cornet, M]]	+	[[Category: Cornet M]]
-	[[Category: Courcon, M]]	+	[[Category: Courcon M]]
-	~~[[Category: Enfert, C d~~]]	+	[[Category: Ferri E]]
-	[[Category: Ferri, E]]	+	[[Category: Garnaud C]]
-	[[Category: Garnaud, C]]	+	[[Category: Govin J]]
-	[[Category: Govin, J]]	+	[[Category: Harbut M]]
-	[[Category: Harbut, M]]	+	[[Category: Hull M]]
-	[[Category: Hull, M]]	+	[[Category: Kashemirov BA]]
-	[[Category: Kashemirov~~, B A~~]]	+	[[Category: Maubon D]]
-	[[Category: Maubon, D]]	+	[[Category: McKenna CE]]
-	[[Category: McKenna~~, C E~~]]	+	[[Category: Mietton F]]
-	[[Category: Mietton, F]]	+	[[Category: Petosa C]]
-	[[Category: Petosa, C]]	+	[[Category: Spittler D]]
-	[[Category: Spittler, D]]	+	[[Category: Zala N]]
-	[[Category: Zala, N]]	+	[[Category: Zhou Y]]
-	[[Category: Zhou, Y]]	+	[[Category: D'Enfert C]]
-	[[Category: ~~Bromodomain]]~~	+
-	~~[[Category: Transcription~~]]	+

OCA at 11:55, 26 August 2020

OCA — Wed, 26 Aug 2020 11:55:27 GMT

←Older revision		Revision as of 11:55, 26 August 2020
Line 1:		Line 1:

	==First Bromodomain (BD1) from Candida albicans Bdf1 bound to a dibenzothiazepinone (compound 1)==		==First Bromodomain (BD1) from Candida albicans Bdf1 bound to a dibenzothiazepinone (compound 1)==
-	<StructureSection load='5n16' size='340' side='right' caption='[[5n16]], [[Resolution\|resolution]] 1.76Å' scene=''>	+	<StructureSection load='5n16' size='340' side='right'caption='[[5n16]], [[Resolution\|resolution]] 1.76Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5n16]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N16 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5N16 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5n16]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N16 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5N16 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8FN:5-cyclopropyl-2-(5-pyrazin-2-yl-1,2,4-oxadiazol-3-yl)benzo[b][1,4]benzothiazepin-6-one'>8FN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8FN:5-cyclopropyl-2-(5-pyrazin-2-yl-1,2,4-oxadiazol-3-yl)benzo[b][1,4]benzothiazepin-6-one'>8FN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5n16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5n16 OCA], [http://pdbe.org/5n16 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5n16 RCSB], [http://www.ebi.ac.uk/pdbsum/5n16 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5n16 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5n16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5n16 OCA], [http://pdbe.org/5n16 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5n16 RCSB], [http://www.ebi.ac.uk/pdbsum/5n16 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5n16 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Champleboux, M]]		[[Category: Champleboux, M]]
	[[Category: Chauvel, M]]		[[Category: Chauvel, M]]

OCA at 11:02, 3 August 2017

OCA — Thu, 03 Aug 2017 11:02:31 GMT

←Older revision		Revision as of 11:02, 3 August 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5n16 is ~~ON HOLD~~	+	==First Bromodomain (BD1) from Candida albicans Bdf1 bound to a dibenzothiazepinone (compound 1)==
		+	<StructureSection load='5n16' size='340' side='right' caption='[[5n16]], [[Resolution\|resolution]] 1.76Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5n16]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5N16 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5N16 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8FN:5-cyclopropyl-2-(5-pyrazin-2-yl-1,2,4-oxadiazol-3-yl)benzo[b][1,4]benzothiazepin-6-one'>8FN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5n16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5n16 OCA], [http://pdbe.org/5n16 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5n16 RCSB], [http://www.ebi.ac.uk/pdbsum/5n16 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5n16 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/BDF1_CANAL BDF1_CANAL]] Transcription factor involved in the expression of a broad class of genes including snRNAs. Required for sporulation and DNA-damage repair. Prevents the spreading of SIR silencing at telomeres and protects histone H4, but not H3, from deacetylation (By similarity).
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Invasive fungal infections cause significant morbidity and mortality among immunocompromised individuals, posing an urgent need for new antifungal therapeutic strategies. Here we investigate a chromatin-interacting module, the bromodomain (BD) from the BET family of proteins, as a potential antifungal target in Candida albicans, a major human fungal pathogen. We show that the BET protein Bdf1 is essential in C. albicans and that mutations inactivating its two BDs result in a loss of viability in vitro and decreased virulence in mice. We report small-molecule compounds that inhibit C. albicans Bdf1 with high selectivity over human BDs. Crystal structures of the Bdf1 BDs reveal binding modes for these inhibitors that are sterically incompatible with the human BET-binding pockets. Furthermore, we report a dibenzothiazepinone compound that phenocopies the effects of a Bdf1 BD-inactivating mutation on C. albicans viability. These findings establish BET inhibition as a promising antifungal therapeutic strategy and identify Bdf1 as an antifungal drug target that can be selectively inhibited without antagonizing human BET function.

-	~~Authors~~:	+	Selective BET bromodomain inhibition as an antifungal therapeutic strategy.,Mietton F, Ferri E, Champleboux M, Zala N, Maubon D, Zhou Y, Harbut M, Spittler D, Garnaud C, Courcon M, Chauvel M, d'Enfert C, Kashemirov BA, Hull M, Cornet M, McKenna CE, Govin J, Petosa C Nat Commun. 2017 May 18;8:15482. doi: 10.1038/ncomms15482. PMID:28516956<ref>PMID:28516956</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5n16" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Champleboux, M]]
		+	[[Category: Chauvel, M]]
		+	[[Category: Cornet, M]]
		+	[[Category: Courcon, M]]
		+	[[Category: Enfert, C d]]
		+	[[Category: Ferri, E]]
		+	[[Category: Garnaud, C]]
		+	[[Category: Govin, J]]
		+	[[Category: Harbut, M]]
		+	[[Category: Hull, M]]
		+	[[Category: Kashemirov, B A]]
		+	[[Category: Maubon, D]]
		+	[[Category: McKenna, C E]]
		+	[[Category: Mietton, F]]
		+	[[Category: Petosa, C]]
		+	[[Category: Spittler, D]]
		+	[[Category: Zala, N]]
		+	[[Category: Zhou, Y]]
		+	[[Category: Bromodomain]]
		+	[[Category: Transcription]]

OCA: Protected "5n16" [edit=sysop:move=sysop]

OCA — Thu, 09 Mar 2017 11:54:22 GMT

Protected "5n16" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:54, 9 March 2017

OCA: New page: '''Unreleased structure''' The entry 5n16 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Thu, 09 Mar 2017 11:54:21 GMT

New page: '''Unreleased structure''' The entry 5n16 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5n16 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]