5nfo - Revision history

OCA at 12:54, 15 November 2023

OCA — Wed, 15 Nov 2023 12:54:16 GMT

←Older revision		Revision as of 12:54, 15 November 2023
Line 3:		Line 3:
	<StructureSection load='5nfo' size='340' side='right'caption='[[5nfo]], [[Resolution\|resolution]] 2.17Å' scene=''>		<StructureSection load='5nfo' size='340' side='right'caption='[[5nfo]], [[Resolution\|resolution]] 2.17Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5nfo]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NFO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5NFO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5nfo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NFO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NFO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.173Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5nfn\|5nfn]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">JMJD7 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nfo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nfo OCA], [https://pdbe.org/5nfo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nfo RCSB], [https://www.ebi.ac.uk/pdbsum/5nfo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nfo ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5nfo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nfo OCA], [~~http~~://pdbe.org/5nfo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5nfo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5nfo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5nfo ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/JMJD7_HUMAN JMJD7_HUMAN]

	==See Also==		==See Also==
-	*[[Jumonji domain-containing protein\|Jumonji domain-containing protein]]	+	*[[Jumonji domain-containing protein 3D structures\|Jumonji domain-containing protein 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chowdhury, R]]	+	[[Category: Chowdhury R]]
-	[[Category: Markolovic, S]]	+	[[Category: Markolovic S]]
-	[[Category: Schofield~~, C J]]~~	+	[[Category: Schofield CJ]]
-	~~[[Category: 2-oxoglutarate]]~~	+
-	~~[[Category: Cancer]]~~	+
-	~~[[Category: Development]]~~	+
-	~~[[Category: Developmentally regulated gtp binding protein]]~~	+
-	~~[[Category: Dimerisation]]~~	+
-	~~[[Category: Dioxygenase]]~~	+
-	~~[[Category: Drg1]]~~	+
-	~~[[Category: Drg2]]~~	+
-	~~[[Category: Dsbh]]~~	+
-	~~[[Category: Facial triad]]~~	+
-	~~[[Category: Helix-loop-helix-beta]]~~	+
-	~~[[Category: Hydroxylation]]~~	+
-	~~[[Category: Hypoxia]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Jmjc]]~~	+
-	~~[[Category: Jmjc demethylase]]~~	+
-	~~[[Category: Jmjc domain]]~~	+
-	~~[[Category: Jmjc domain-containing protein 7]]~~	+
-	~~[[Category: Jmjc hydroxylase]]~~	+
-	~~[[Category: Jmjd7]]~~	+
-	~~[[Category: Kdm]]~~	+
-	~~[[Category: Lysyl hydroxylation]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Non-heme]]~~	+
-	~~[[Category: Nucleic acid-binding]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Oxygenase]]~~	+
-	~~[[Category: Post-translational modification]]~~	+
-	~~[[Category: Ptm]]~~	+
-	~~[[Category: Ribosome biogenesis]]~~	+
-	~~[[Category: Trafac gtpase]]~~	+
-	~~[[Category: Translation]]~~	+
-	~~[[Category: Translation factor~~]]	+

OCA at 06:03, 12 June 2019

OCA — Wed, 12 Jun 2019 06:03:15 GMT

←Older revision		Revision as of 06:03, 12 June 2019
Line 1:		Line 1:

	==Human JMJD7 in complex with Mn and 2OG in the P21212 form==		==Human JMJD7 in complex with Mn and 2OG in the P21212 form==
-	<StructureSection load='5nfo' size='340' side='right' caption='[[5nfo]], [[Resolution\|resolution]] 2.17Å' scene=''>	+	<StructureSection load='5nfo' size='340' side='right'caption='[[5nfo]], [[Resolution\|resolution]] 2.17Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5nfo]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NFO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NFO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5nfo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NFO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NFO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5nfn\|5nfn]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5nfn\|5nfn]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">JMJD7 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nfo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nfo OCA], [http://pdbe.org/5nfo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nfo RCSB], [http://www.ebi.ac.uk/pdbsum/5nfo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nfo ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nfo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nfo OCA], [http://pdbe.org/5nfo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nfo RCSB], [http://www.ebi.ac.uk/pdbsum/5nfo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nfo ProSAT]</span></td></tr>
	</table>		</table>
		+
		+	==See Also==
		+	*[[Jumonji domain-containing protein\|Jumonji domain-containing protein]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~CHOWDHURY~~, R]]	+	[[Category: Human]]
		+	[[Category: Large Structures]]
		+	[[Category: Chowdhury, R]]
	[[Category: Markolovic, S]]		[[Category: Markolovic, S]]
-	[[Category: ~~SCHOFIELD~~, C J]]	+	[[Category: Schofield, C J]]
	[[Category: 2-oxoglutarate]]		[[Category: 2-oxoglutarate]]
	[[Category: Cancer]]		[[Category: Cancer]]

OCA at 06:19, 14 March 2018

OCA — Wed, 14 Mar 2018 06:19:38 GMT

←Older revision		Revision as of 06:19, 14 March 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5nfo is ~~ON HOLD~~	+	==Human JMJD7 in complex with Mn and 2OG in the P21212 form==
-		+	<StructureSection load='5nfo' size='340' side='right' caption='[[5nfo]], [[Resolution\|resolution]] 2.17Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5nfo]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NFO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NFO FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5nfn\|5nfn]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5nfo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nfo OCA], [http://pdbe.org/5nfo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5nfo RCSB], [http://www.ebi.ac.uk/pdbsum/5nfo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5nfo ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: CHOWDHURY, R]]
		+	[[Category: Markolovic, S]]
		+	[[Category: SCHOFIELD, C J]]
		+	[[Category: 2-oxoglutarate]]
		+	[[Category: Cancer]]
		+	[[Category: Development]]
		+	[[Category: Developmentally regulated gtp binding protein]]
		+	[[Category: Dimerisation]]
		+	[[Category: Dioxygenase]]
		+	[[Category: Drg1]]
		+	[[Category: Drg2]]
		+	[[Category: Dsbh]]
		+	[[Category: Facial triad]]
		+	[[Category: Helix-loop-helix-beta]]
		+	[[Category: Hydroxylation]]
		+	[[Category: Hypoxia]]
		+	[[Category: Iron]]
		+	[[Category: Jmjc]]
		+	[[Category: Jmjc demethylase]]
		+	[[Category: Jmjc domain]]
		+	[[Category: Jmjc domain-containing protein 7]]
		+	[[Category: Jmjc hydroxylase]]
		+	[[Category: Jmjd7]]
		+	[[Category: Kdm]]
		+	[[Category: Lysyl hydroxylation]]
		+	[[Category: Metal-binding]]
		+	[[Category: Non-heme]]
		+	[[Category: Nucleic acid-binding]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Oxygenase]]
		+	[[Category: Post-translational modification]]
		+	[[Category: Ptm]]
		+	[[Category: Ribosome biogenesis]]
		+	[[Category: Trafac gtpase]]
		+	[[Category: Translation]]
		+	[[Category: Translation factor]]

OCA: Protected "5nfo" [edit=sysop:move=sysop]

OCA — Wed, 05 Apr 2017 10:03:21 GMT

Protected "5nfo" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:03, 5 April 2017

OCA: New page: '''Unreleased structure''' The entry 5nfo is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 05 Apr 2017 10:03:19 GMT

New page: '''Unreleased structure''' The entry 5nfo is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5nfo is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]