5oun - Revision history

OCA at 10:24, 14 June 2023

OCA — Wed, 14 Jun 2023 10:24:20 GMT

←Older revision		Revision as of 10:24, 14 June 2023
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	==NMR solution structure of the external DII domain of Rvb2 from Saccharomyces cerevisiae==		==NMR solution structure of the external DII domain of Rvb2 from Saccharomyces cerevisiae==
-	<StructureSection load='5oun' size='340' side='right'caption='[[5oun~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='5oun' size='340' side='right'caption='[[5oun]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5oun]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_18824 Atcc 18824~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OUN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5OUN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5oun]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OUN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5OUN FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RVB2, TIH2, TIP49B, YPL235W, P1060 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5oun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oun OCA], [https://pdbe.org/5oun PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5oun RCSB], [https://www.ebi.ac.uk/pdbsum/5oun PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5oun ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_helicase DNA helicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.4.12 3.6.4.12] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5oun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oun OCA], [~~http~~://pdbe.org/5oun PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5oun RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5oun PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5oun ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/RUVB2_YEAST RUVB2_YEAST]] DNA helicase which participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. The SWR1 complex mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. The INO80 complex remodels chromatin by shifting nucleosomes. Its ability to induce transcription of some phosphate-responsive genes is modulated by inositol polyphosphates. The INO80 complex is involved in DNA repair by associating to 'Ser-129' phosphorylated H2A histones as a response to DNA damage. During transcription may recruit SPT15/TBP to the TATA-boxes of involved genes. Required for box C/D and box H/ACA snoRNA accumulation and involved in pre-rRNA processing.<ref>PMID:10787406</ref> <ref>PMID:10952318</ref> <ref>PMID:11278922</ref> <ref>PMID:11604509</ref> <ref>PMID:12576485</ref> <ref>PMID:14645854</ref> <ref>PMID:14690608</ref> <ref>PMID:15045029</ref> <ref>PMID:15525518</ref>	+	[https://www.uniprot.org/uniprot/RUVB2_YEAST RUVB2_YEAST] DNA helicase which participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. The SWR1 complex mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. The INO80 complex remodels chromatin by shifting nucleosomes. Its ability to induce transcription of some phosphate-responsive genes is modulated by inositol polyphosphates. The INO80 complex is involved in DNA repair by associating to 'Ser-129' phosphorylated H2A histones as a response to DNA damage. During transcription may recruit SPT15/TBP to the TATA-boxes of involved genes. Required for box C/D and box H/ACA snoRNA accumulation and involved in pre-rRNA processing.<ref>PMID:10787406</ref> <ref>PMID:10952318</ref> <ref>PMID:11278922</ref> <ref>PMID:11604509</ref> <ref>PMID:12576485</ref> <ref>PMID:14645854</ref> <ref>PMID:14690608</ref> <ref>PMID:15045029</ref> <ref>PMID:15525518</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 19:		Line 17:
	</div>		</div>
	<div class="pdbe-citations 5oun" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5oun" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Helicase 3D structures\|Helicase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 18824]]
-	[[Category: DNA helicase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bragantini, B]]	+	[[Category: Saccharomyces cerevisiae]]
-	[[Category: Charpentier, B]]	+	[[Category: Bragantini B]]
-	[[Category: Manival, X]]	+	[[Category: Charpentier B]]
-	[[Category: Quinternet, M]]	+	[[Category: Manival X]]
-	[[Category: Rouillon, C]]	+	[[Category: Quinternet M]]
-	~~[[Category: Atpase chaperon rvb1 rvb2 ruvbl1 ruvbl2 nmr snornp]]~~	+	[[Category: Rouillon C]]
-	~~[[Category: Hydrolase~~]]	+

OCA at 13:19, 10 May 2019

OCA — Fri, 10 May 2019 13:19:06 GMT

←Older revision		Revision as of 13:19, 10 May 2019
Line 1:		Line 1:

	==NMR solution structure of the external DII domain of Rvb2 from Saccharomyces cerevisiae==		==NMR solution structure of the external DII domain of Rvb2 from Saccharomyces cerevisiae==
-	<StructureSection load='5oun' size='340' side='right' caption='[[5oun]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='5oun' size='340' side='right'caption='[[5oun]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5oun]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OUN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OUN FirstGlance]. <br>		<table><tr><td colspan='2'>[[5oun]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OUN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OUN FirstGlance]. <br>
Line 25:		Line 25:
	[[Category: Atcc 18824]]		[[Category: Atcc 18824]]
	[[Category: DNA helicase]]		[[Category: DNA helicase]]
		+	[[Category: Large Structures]]
	[[Category: Bragantini, B]]		[[Category: Bragantini, B]]
	[[Category: Charpentier, B]]		[[Category: Charpentier, B]]

OCA at 06:50, 4 April 2018

OCA — Wed, 04 Apr 2018 06:50:07 GMT

←Older revision		Revision as of 06:50, 4 April 2018
Line 3:		Line 3:
	<StructureSection load='5oun' size='340' side='right' caption='[[5oun]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='5oun' size='340' side='right' caption='[[5oun]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5oun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OUN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OUN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5oun]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OUN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OUN FirstGlance]. <br>
-	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_helicase DNA helicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.4.12 3.6.4.12] </span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RVB2, TIH2, TIP49B, YPL235W, P1060 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_helicase DNA helicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.4.12 3.6.4.12] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5oun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oun OCA], [http://pdbe.org/5oun PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5oun RCSB], [http://www.ebi.ac.uk/pdbsum/5oun PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5oun ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5oun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oun OCA], [http://pdbe.org/5oun PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5oun RCSB], [http://www.ebi.ac.uk/pdbsum/5oun PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5oun ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/RUVB2_YEAST RUVB2_YEAST]] DNA helicase which participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. The SWR1 complex mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. The INO80 complex remodels chromatin by shifting nucleosomes. Its ability to induce transcription of some phosphate-responsive genes is modulated by inositol polyphosphates. The INO80 complex is involved in DNA repair by associating to 'Ser-129' phosphorylated H2A histones as a response to DNA damage. During transcription may recruit SPT15/TBP to the TATA-boxes of involved genes. Required for box C/D and box H/ACA snoRNA accumulation and involved in pre-rRNA processing.<ref>PMID:10787406</ref> <ref>PMID:10952318</ref> <ref>PMID:11278922</ref> <ref>PMID:11604509</ref> <ref>PMID:12576485</ref> <ref>PMID:14645854</ref> <ref>PMID:14690608</ref> <ref>PMID:15045029</ref> <ref>PMID:15525518</ref>		[[http://www.uniprot.org/uniprot/RUVB2_YEAST RUVB2_YEAST]] DNA helicase which participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. The SWR1 complex mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. The INO80 complex remodels chromatin by shifting nucleosomes. Its ability to induce transcription of some phosphate-responsive genes is modulated by inositol polyphosphates. The INO80 complex is involved in DNA repair by associating to 'Ser-129' phosphorylated H2A histones as a response to DNA damage. During transcription may recruit SPT15/TBP to the TATA-boxes of involved genes. Required for box C/D and box H/ACA snoRNA accumulation and involved in pre-rRNA processing.<ref>PMID:10787406</ref> <ref>PMID:10952318</ref> <ref>PMID:11278922</ref> <ref>PMID:11604509</ref> <ref>PMID:12576485</ref> <ref>PMID:14645854</ref> <ref>PMID:14690608</ref> <ref>PMID:15045029</ref> <ref>PMID:15525518</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We report the nearly complete (1)H, (15)N and (13)C resonance assignment and the solution structure of the external DII domain of the yeast Rvb2 protein, a member of the AAA+ATPase superfamily.
		+
		+	NMR assignment and solution structure of the external DII domain of the yeast Rvb2 protein.,Bragantini B, Rouillon C, Charpentier B, Manival X, Quinternet M Biomol NMR Assign. 2018 Mar 22. pii: 10.1007/s12104-018-9816-5. doi:, 10.1007/s12104-018-9816-5. PMID:29569106<ref>PMID:29569106</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5oun" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 18824]]
	[[Category: DNA helicase]]		[[Category: DNA helicase]]
	[[Category: Bragantini, B]]		[[Category: Bragantini, B]]

OCA at 06:30, 28 March 2018

OCA — Wed, 28 Mar 2018 06:30:25 GMT

←Older revision		Revision as of 06:30, 28 March 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 5oun is ON HOLD until Paper Publication~~	+	==NMR solution structure of the external DII domain of Rvb2 from Saccharomyces cerevisiae==
-		+	<StructureSection load='5oun' size='340' side='right' caption='[[5oun]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
-	~~Authors: Rouillon, C., Bragantini, B., Charpentier, B., Manival, X., Quinternet, M.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5oun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OUN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OUN FirstGlance]. <br>
-	~~Description:~~ NMR solution structure of the external DII domain of Rvb2 from Saccharomyces cerevisiae	+	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_helicase DNA helicase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.4.12 3.6.4.12] </span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5oun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oun OCA], [http://pdbe.org/5oun PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5oun RCSB], [http://www.ebi.ac.uk/pdbsum/5oun PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5oun ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Rouillon~~, C]]	+	</table>
-	[[~~Category~~: ~~Manival~~, X]]	+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RUVB2_YEAST RUVB2_YEAST]] DNA helicase which participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. The SWR1 complex mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. The INO80 complex remodels chromatin by shifting nucleosomes. Its ability to induce transcription of some phosphate-responsive genes is modulated by inositol polyphosphates. The INO80 complex is involved in DNA repair by associating to 'Ser-129' phosphorylated H2A histones as a response to DNA damage. During transcription may recruit SPT15/TBP to the TATA-boxes of involved genes. Required for box C/D and box H/ACA snoRNA accumulation and involved in pre-rRNA processing.<ref>PMID:10787406</ref> <ref>PMID:10952318</ref> <ref>PMID:11278922</ref> <ref>PMID:11604509</ref> <ref>PMID:12576485</ref> <ref>PMID:14645854</ref> <ref>PMID:14690608</ref> <ref>PMID:15045029</ref> <ref>PMID:15525518</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: DNA helicase]]
	[[Category: Bragantini, B]]		[[Category: Bragantini, B]]
	[[Category: Charpentier, B]]		[[Category: Charpentier, B]]
		+	[[Category: Manival, X]]
	[[Category: Quinternet, M]]		[[Category: Quinternet, M]]
		+	[[Category: Rouillon, C]]
		+	[[Category: Atpase chaperon rvb1 rvb2 ruvbl1 ruvbl2 nmr snornp]]
		+	[[Category: Hydrolase]]

OCA: Protected "5oun" [edit=sysop:move=sysop]

OCA — Wed, 27 Sep 2017 12:52:17 GMT

Protected "5oun" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:52, 27 September 2017

OCA: New page: '''Unreleased structure''' The entry 5oun is ON HOLD until Paper Publication Authors: Rouillon, C., Bragantini, B., Charpentier, B., Manival, X., Quinternet, M. Description: NMR soluti...

OCA — Wed, 27 Sep 2017 12:52:16 GMT

New page: '''Unreleased structure''' The entry 5oun is ON HOLD until Paper Publication Authors: Rouillon, C., Bragantini, B., Charpentier, B., Manival, X., Quinternet, M. Description: NMR soluti...

New page

'''Unreleased structure'''

The entry 5oun is ON HOLD until Paper Publication

Authors: Rouillon, C., Bragantini, B., Charpentier, B., Manival, X., Quinternet, M.

Description: NMR solution structure of the external DII domain of Rvb2 from Saccharomyces cerevisiae
[[Category: Unreleased Structures]]
[[Category: Rouillon, C]]
[[Category: Manival, X]]
[[Category: Bragantini, B]]
[[Category: Charpentier, B]]
[[Category: Quinternet, M]]