5qjv - Revision history

OCA at 08:56, 7 February 2024

OCA — Wed, 07 Feb 2024 08:56:58 GMT

←Older revision		Revision as of 08:56, 7 February 2024
Line 3:		Line 3:
	<StructureSection load='5qjv' size='340' side='right'caption='[[5qjv]], [[Resolution\|resolution]] 1.61Å' scene=''>		<StructureSection load='5qjv' size='340' side='right'caption='[[5qjv]], [[Resolution\|resolution]] 1.61Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5qjv]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QJV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5QJV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5qjv]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QJV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5QJV FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=K2J:4-methoxy-N-methylpyrimidin-2-amine'>K2J</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.61Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qjv OCA], [~~http~~://pdbe.org/5qjv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5qjv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5qjv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5qjv ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=K2J:4-methoxy-N-methylpyrimidin-2-amine'>K2J</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qjv OCA], [https://pdbe.org/5qjv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5qjv RCSB], [https://www.ebi.ac.uk/pdbsum/5qjv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5qjv ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/NUDT5_HUMAN NUDT5_HUMAN]] Hydrolyzes with similar activities ADP-ribose ADP-mannose, ADP-glucose, 8-oxo-GDP and 8-oxo-dGDP. Can also hydrolyze other nucleotide sugars with low activity.<ref>PMID:17052728</ref>	+	[https://www.uniprot.org/uniprot/NUDT5_HUMAN NUDT5_HUMAN] Hydrolyzes with similar activities ADP-ribose ADP-mannose, ADP-glucose, 8-oxo-GDP and 8-oxo-dGDP. Can also hydrolyze other nucleotide sugars with low activity.<ref>PMID:17052728</ref>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Arrowsmith~~, C H~~]]	+	[[Category: Arrowsmith CH]]
-	[[Category: Bountra, C]]	+	[[Category: Bountra C]]
-	[[Category: Burgess-Brown, N]]	+	[[Category: Burgess-Brown N]]
-	[[Category: Collins, P]]	+	[[Category: Collins P]]
-	~~[[Category: Delft, F von~~]]	+	[[Category: Dubianok Y]]
-	[[Category: Dubianok, Y]]	+	[[Category: Edwards A]]
-	[[Category: Edwards, A]]	+	[[Category: Huber K]]
-	[[Category: Huber, K]]	+	[[Category: Krojer T]]
-	[[Category: Krojer, T]]	+	[[Category: Strain-Damerell C]]
-	[[Category: Strain-Damerell, C]]	+	[[Category: Wright N]]
-	[[Category: Wright, N]]	+	[[Category: Von Delft F]]
-	[[Category: ~~Hydrolase]]~~	+
-	~~[[Category: Nudt5]]~~	+
-	~~[[Category: Pandda]]~~	+
-	~~[[Category: Sgc - diamond i04-1 fragment screening]]~~	+
-	~~[[Category: Xchemexplorer~~]]	+

OCA at 12:08, 23 September 2020

OCA — Wed, 23 Sep 2020 12:08:11 GMT

←Older revision		Revision as of 12:08, 23 September 2020
Line 1:		Line 1:

	==PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT5 in complex with Z281802060==		==PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT5 in complex with Z281802060==
-	<StructureSection load='5qjv' size='340' side='right' caption='[[5qjv]], [[Resolution\|resolution]] 1.61Å' scene=''>	+	<StructureSection load='5qjv' size='340' side='right'caption='[[5qjv]], [[Resolution\|resolution]] 1.61Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5qjv]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QJV OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5QJV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5qjv]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QJV OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5QJV FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=K2J:4-methoxy-N-methylpyrimidin-2-amine'>K2J</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=K2J:4-methoxy-N-methylpyrimidin-2-amine'>K2J</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qjv OCA], [http://pdbe.org/5qjv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5qjv RCSB], [http://www.ebi.ac.uk/pdbsum/5qjv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5qjv ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qjv OCA], [http://pdbe.org/5qjv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5qjv RCSB], [http://www.ebi.ac.uk/pdbsum/5qjv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5qjv ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 13:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Arrowsmith, C H]]		[[Category: Arrowsmith, C H]]
	[[Category: Bountra, C]]		[[Category: Bountra, C]]

OCA at 08:08, 19 December 2018

OCA — Wed, 19 Dec 2018 08:08:16 GMT

←Older revision		Revision as of 08:08, 19 December 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5qjv ~~is ON HOLD~~	+	==PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT5 in complex with Z281802060==
-		+	<StructureSection load='5qjv' size='340' side='right' caption='[[5qjv]], [[Resolution\|resolution]] 1.61Å' scene=''>
-	~~Authors~~: ~~Dubianok, Y~~.~~, Collins, P~~.~~, Krojer, T~~.~~, Wright, N~~.~~, Strain~~-~~Damerell, C~~., ~~Burgess~~-~~Brown~~, N., ~~Bountra, C~~., ~~Arrowsmith, C~~.H., ~~Edwards, A~~., ~~Huber~~, K., ~~von Delft, F~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5qjv]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QJV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5QJV FirstGlance]. <br>
-	~~Description~~: ~~PanDDA analysis group deposition of models with modelled events (e~~.g. ~~bound ligands)~~ --~~Crystal Structure of NUDT5 in complex~~ with ~~Z281802060~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=K2J:4-methoxy-N-methylpyrimidin-2-amine'>K2J</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5qjv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qjv OCA], [http://pdbe.org/5qjv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5qjv RCSB], [http://www.ebi.ac.uk/pdbsum/5qjv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5qjv ProSAT]</span></td></tr>
-	[[Category: ~~Wright~~, N]]	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NUDT5_HUMAN NUDT5_HUMAN]] Hydrolyzes with similar activities ADP-ribose ADP-mannose, ADP-glucose, 8-oxo-GDP and 8-oxo-dGDP. Can also hydrolyze other nucleotide sugars with low activity.<ref>PMID:17052728</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Arrowsmith, C H]]
		+	[[Category: Bountra, C]]
		+	[[Category: Burgess-Brown, N]]
	[[Category: Collins, P]]		[[Category: Collins, P]]
-	[[Category: ~~Huber~~, ~~K]]~~	+	[[Category: Delft, F von]]
-	~~[[Category: Arrowsmith, C.H]]~~	+
-	~~[[Category: Burgess-Brown, N~~]]	+
	[[Category: Dubianok, Y]]		[[Category: Dubianok, Y]]
	[[Category: Edwards, A]]		[[Category: Edwards, A]]
		+	[[Category: Huber, K]]
		+	[[Category: Krojer, T]]
	[[Category: Strain-Damerell, C]]		[[Category: Strain-Damerell, C]]
-	[[Category: ~~Krojer~~, T]]	+	[[Category: Wright, N]]
-	[[Category: ~~Von Delft, F~~]]	+	[[Category: Hydrolase]]
-	[[Category: ~~Bountra, C~~]]	+	[[Category: Nudt5]]
		+	[[Category: Pandda]]
		+	[[Category: Sgc - diamond i04-1 fragment screening]]
		+	[[Category: Xchemexplorer]]

OCA: Protected "5qjv" [edit=sysop:move=sysop]

OCA — Wed, 24 Oct 2018 04:03:10 GMT

Protected "5qjv" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:03, 24 October 2018

OCA: New page: '''Unreleased structure''' The entry 5qjv is ON HOLD Authors: Dubianok, Y., Collins, P., Krojer, T., Wright, N., Strain-Damerell, C., Burgess-Brown, N., Bountra, C., Arrowsmith, C.H., E...

OCA — Wed, 24 Oct 2018 04:03:09 GMT

New page: '''Unreleased structure''' The entry 5qjv is ON HOLD Authors: Dubianok, Y., Collins, P., Krojer, T., Wright, N., Strain-Damerell, C., Burgess-Brown, N., Bountra, C., Arrowsmith, C.H., E...

New page

'''Unreleased structure'''

The entry 5qjv is ON HOLD

Authors: Dubianok, Y., Collins, P., Krojer, T., Wright, N., Strain-Damerell, C., Burgess-Brown, N., Bountra, C., Arrowsmith, C.H., Edwards, A., Huber, K., von Delft, F.

Description: PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) --Crystal Structure of NUDT5 in complex with Z281802060
[[Category: Unreleased Structures]]
[[Category: Wright, N]]
[[Category: Collins, P]]
[[Category: Huber, K]]
[[Category: Arrowsmith, C.H]]
[[Category: Burgess-Brown, N]]
[[Category: Dubianok, Y]]
[[Category: Edwards, A]]
[[Category: Strain-Damerell, C]]
[[Category: Krojer, T]]
[[Category: Von Delft, F]]
[[Category: Bountra, C]]