5qu9 - Revision history

OCA at 11:28, 21 February 2024

OCA — Wed, 21 Feb 2024 11:28:12 GMT

←Older revision		Revision as of 11:28, 21 February 2024
Line 3:		Line 3:
	<StructureSection load='5qu9' size='340' side='right'caption='[[5qu9]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='5qu9' size='340' side='right'caption='[[5qu9]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5qu9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QU9 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5QU9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5qu9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QU9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5QU9 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=EDO:1~~,2~~-ETHANEDIOL'>EDO</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks'>[http~~:~~//en.wikipedia.org/wiki/Small_monomeric_GTPase Small monomeric GTPase]~~, ~~with EC number [http://www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=3.6.5.2 3.6.5.2]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5qu9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qu9 OCA], [~~http~~://pdbe.org/5qu9 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5qu9 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5qu9 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5qu9 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5qu9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qu9 OCA], [https://pdbe.org/5qu9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5qu9 RCSB], [https://www.ebi.ac.uk/pdbsum/5qu9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5qu9 ProSAT]</span></td></tr>
	</table>		</table>
-	== Disease ==
-	[[http://www.uniprot.org/uniprot/KALRN_HUMAN KALRN_HUMAN]] Disease susceptibility is associated with variations affecting the gene represented in this entry.
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/RAC1_HUMAN RAC1_HUMAN]] Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity in macrophages (By similarity). Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. Stimulates PKN2 kinase activity. In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. In glioma cells, promotes cell migration and invasion.<ref>PMID:1643658</ref> <ref>PMID:9121475</ref> <ref>PMID:19934221</ref> <ref>PMID:19403692</ref> <ref>PMID:20696765</ref> Isoform B has an accelerated GEF-independent GDP/GTP exchange and an impaired GTP hydrolysis, which is restored partially by GTPase-activating proteins. It is able to bind to the GTPase-binding domain of PAK but not full-length PAK in a GTP-dependent manner, suggesting that the insertion does not completely abolish effector interaction.<ref>PMID:1643658</ref> <ref>PMID:9121475</ref> <ref>PMID:19934221</ref> <ref>PMID:19403692</ref> <ref>PMID:20696765</ref> [[~~http://www.uniprot.org/uniprot/KALRN_HUMAN KALRN_HUMAN~~]] Promotes the exchange of GDP by GTP. Activates specific Rho GTPase family members, thereby inducing various signaling mechanisms that regulate neuronal shape, growth, and plasticity, through their effects on the actin cytoskeleton. Induces lamellipodia independent of its GEF activity.<ref>PMID:10023074</ref>	+	[https://www.uniprot.org/uniprot/RAC1_HUMAN RAC1_HUMAN] Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity in macrophages (By similarity). Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. Stimulates PKN2 kinase activity. In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. In glioma cells, promotes cell migration and invasion.<ref>PMID:1643658</ref> <ref>PMID:9121475</ref> <ref>PMID:19934221</ref> <ref>PMID:19403692</ref> <ref>PMID:20696765</ref> Isoform B has an accelerated GEF-independent GDP/GTP exchange and an impaired GTP hydrolysis, which is restored partially by GTPase-activating proteins. It is able to bind to the GTPase-binding domain of PAK but not full-length PAK in a GTP-dependent manner, suggesting that the insertion does not completely abolish effector interaction.<ref>PMID:1643658</ref> <ref>PMID:9121475</ref> <ref>PMID:19934221</ref> <ref>PMID:19403692</ref> <ref>PMID:20696765</ref>
		+
		+	==See Also==
		+	*[[Rac 3D structures\|Rac 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Small monomeric GTPase]]~~	+	[[Category: Arrowsmith CH]]
-	~~[[Category: Antunez, C Jimenez]]~~	+	[[Category: Bountra C]]
-	[[Category: Arrowsmith~~, C H~~]]	+	[[Category: Brennan PE]]
-	[[Category: Bountra, C]]	+	[[Category: Douangamath A]]
-	[[Category: Brennan~~, P E~~]]	+	[[Category: Edwards A]]
-	[[Category: ~~Delft, F von~~]]	+	[[Category: Gray JL]]
-	[[Category: ~~Douangamath,~~ A]]	+	[[Category: Jimenez Antunez C]]
-	[[Category: ~~Edwards, A~~]]	+	[[Category: Krojer T]]
-	[[Category: ~~Gray, J L~~]]	+	[[Category: Talon R]]
-	[[Category: Krojer, T]]	+	[[Category: Von Delft F]]
-	[[Category: Talon, R]]	+
-	[[Category: ~~Hydrolase-transferase complex]]~~	+
-	~~[[Category: Sgc - diamond i04-1 fragment screening]]~~	+
-	~~[[Category: Xchemexplorer~~]]	+

OCA at 15:23, 29 January 2020

OCA — Wed, 29 Jan 2020 15:23:48 GMT

←Older revision		Revision as of 15:23, 29 January 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 5qu9 is ON HOLD~~	+	==PanDDA analysis group deposition of ground-state model of Kalirin/Rac1 screened against a customized urea fragment library by X-ray Crystallography at the XChem facility of Diamond Light Source beamline I04-1==
-		+	<StructureSection load='5qu9' size='340' side='right'caption='[[5qu9]], [[Resolution\|resolution]] 2.00Å' scene=''>
-	~~Authors: Gray, J.L., Krojer, T., Talon, R., Douangamath, A., Jimenez Antunez, C., Bountra, C., Arrowsmith, C.H., Edwards, A., Brennan, P.E., von Delft, F.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5qu9]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5QU9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5QU9 FirstGlance]. <br>
-	~~Description:~~ PanDDA analysis group deposition of ground-state model of Kalirin/Rac1 screened against a customized urea fragment library by X-ray Crystallography at the XChem facility of Diamond Light Source beamline I04-1	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Small_monomeric_GTPase Small monomeric GTPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.5.2 3.6.5.2] </span></td></tr>
-	[[Category: ~~Jimenez~~ Antunez, C]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5qu9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5qu9 OCA], [http://pdbe.org/5qu9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5qu9 RCSB], [http://www.ebi.ac.uk/pdbsum/5qu9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5qu9 ProSAT]</span></td></tr>
-	[[Category: Arrowsmith, C.H]]	+	</table>
-	[[Category: ~~Talon~~, R]]	+	== Disease ==
-	[[Category: ~~Gray~~, ~~J.L~~]]	+	[[http://www.uniprot.org/uniprot/KALRN_HUMAN KALRN_HUMAN]] Disease susceptibility is associated with variations affecting the gene represented in this entry.
-	[[Category: ~~Brennan~~, ~~P.E~~]]	+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RAC1_HUMAN RAC1_HUMAN]] Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity in macrophages (By similarity). Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. Stimulates PKN2 kinase activity. In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. In glioma cells, promotes cell migration and invasion.<ref>PMID:1643658</ref> <ref>PMID:9121475</ref> <ref>PMID:19934221</ref> <ref>PMID:19403692</ref> <ref>PMID:20696765</ref> Isoform B has an accelerated GEF-independent GDP/GTP exchange and an impaired GTP hydrolysis, which is restored partially by GTPase-activating proteins. It is able to bind to the GTPase-binding domain of PAK but not full-length PAK in a GTP-dependent manner, suggesting that the insertion does not completely abolish effector interaction.<ref>PMID:1643658</ref> <ref>PMID:9121475</ref> <ref>PMID:19934221</ref> <ref>PMID:19403692</ref> <ref>PMID:20696765</ref> [[http://www.uniprot.org/uniprot/KALRN_HUMAN KALRN_HUMAN]] Promotes the exchange of GDP by GTP. Activates specific Rho GTPase family members, thereby inducing various signaling mechanisms that regulate neuronal shape, growth, and plasticity, through their effects on the actin cytoskeleton. Induces lamellipodia independent of its GEF activity.<ref>PMID:10023074</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Small monomeric GTPase]]
		+	[[Category: Antunez, C Jimenez]]
		+	[[Category: Arrowsmith, C H]]
		+	[[Category: Bountra, C]]
		+	[[Category: Brennan, P E]]
		+	[[Category: Delft, F von]]
	[[Category: Douangamath, A]]		[[Category: Douangamath, A]]
	[[Category: Edwards, A]]		[[Category: Edwards, A]]
		+	[[Category: Gray, J L]]
	[[Category: Krojer, T]]		[[Category: Krojer, T]]
-	[[Category: ~~Von Delft~~, F]]	+	[[Category: Talon, R]]
-	[[Category: ~~Bountra, C~~]]	+	[[Category: Hydrolase-transferase complex]]
		+	[[Category: Sgc - diamond i04-1 fragment screening]]
		+	[[Category: Xchemexplorer]]

OCA: Protected "5qu9" [edit=sysop:move=sysop]

OCA — Wed, 18 Dec 2019 05:31:49 GMT

Protected "5qu9" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:31, 18 December 2019

OCA: New page: '''Unreleased structure''' The entry 5qu9 is ON HOLD Authors: Gray, J.L., Krojer, T., Talon, R., Douangamath, A., Jimenez Antunez, C., Bountra, C., Arrowsmith, C.H., Edwards, A., Brenna...

OCA — Wed, 18 Dec 2019 05:31:47 GMT

New page: '''Unreleased structure''' The entry 5qu9 is ON HOLD Authors: Gray, J.L., Krojer, T., Talon, R., Douangamath, A., Jimenez Antunez, C., Bountra, C., Arrowsmith, C.H., Edwards, A., Brenna...

New page

'''Unreleased structure'''

The entry 5qu9 is ON HOLD

Authors: Gray, J.L., Krojer, T., Talon, R., Douangamath, A., Jimenez Antunez, C., Bountra, C., Arrowsmith, C.H., Edwards, A., Brennan, P.E., von Delft, F.

Description: PanDDA analysis group deposition of ground-state model of Kalirin/Rac1 screened against a customized urea fragment library by X-ray Crystallography at the XChem facility of Diamond Light Source beamline I04-1
[[Category: Unreleased Structures]]
[[Category: Jimenez Antunez, C]]
[[Category: Arrowsmith, C.H]]
[[Category: Talon, R]]
[[Category: Gray, J.L]]
[[Category: Brennan, P.E]]
[[Category: Douangamath, A]]
[[Category: Edwards, A]]
[[Category: Krojer, T]]
[[Category: Von Delft, F]]
[[Category: Bountra, C]]