5sdj - Revision history

OCA at 15:31, 6 March 2024

OCA — Wed, 06 Mar 2024 15:31:11 GMT

←Older revision		Revision as of 15:31, 6 March 2024
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	==PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z32327641==		==PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z32327641==
-	<StructureSection load='5sdj' size='340' side='right'caption='[[5sdj]]' scene=''>	+	<StructureSection load='5sdj' size='340' side='right'caption='[[5sdj]], [[Resolution\|resolution]] 2.04Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5SDJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5sdj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5SDJ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5sdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5sdj OCA], [https://pdbe.org/5sdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5sdj RCSB], [https://www.ebi.ac.uk/pdbsum/5sdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5sdj ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.041Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=JMM:[4-(cyclopropanecarbonyl)piperazin-1-yl](furan-2-yl)methanone'>JMM</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5sdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5sdj OCA], [https://pdbe.org/5sdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5sdj RCSB], [https://www.ebi.ac.uk/pdbsum/5sdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5sdj ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/DPP11_PORG3 DPP11_PORG3] Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. Shows a strict specificity for acidic residues (Asp or Glu) in the P1 position, and has a hydrophobic residue preference at the P2 position. Preferentially cleaves the synthetic substrate Leu-Asp-methylcoumaryl-7-amide (Leu-Asp-MCA) as compared to Leu-Glu-MCA. Is involved in amino acid metabolism and bacterial growth of asaccharolytic P.gingivalis, that utilizes amino acids from extracellular proteinaceous nutrients as energy and carbon sources.<ref>PMID:21896480</ref> <ref>PMID:23246913</ref>
		+
		+	==See Also==
		+	*[[Dipeptidyl peptidase 3D structures\|Dipeptidyl peptidase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Porphyromonas gingivalis]]
	[[Category: Bezerra GA]]		[[Category: Bezerra GA]]
	[[Category: Bountra C]]		[[Category: Bountra C]]

OCA at 07:21, 9 February 2022

OCA — Wed, 09 Feb 2022 07:21:10 GMT

←Older revision		Revision as of 07:21, 9 February 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 5sdj ~~is ON HOLD~~	+	==PanDDA analysis group deposition -- Crystal Structure of Porphyromonas gingivalis in complex with Z32327641==
-		+	<StructureSection load='5sdj' size='340' side='right'caption='[[5sdj]]' scene=''>
-	~~Authors~~: ~~Tham, C~~.T.~~, Coker, J~~.A.~~, Krojer, T~~.~~, Foster, W~~.R.~~, Koekemoer, L~~.~~, Douangamath, A~~., ~~Talon, R~~.~~, Fearon, D~~., ~~von Delft, F~~., ~~Yue, W~~.W., ~~Bountra, C~~., ~~Bezerra, G~~.A.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5SDJ FirstGlance]. <br>
-	~~Description: PanDDA analysis group deposition --Crystal Structure of Porphyromonas gingivalis in complex with Z32327641~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5sdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5sdj OCA], [https://pdbe.org/5sdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5sdj RCSB], [https://www.ebi.ac.uk/pdbsum/5sdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5sdj ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
-	[[Category: ~~Foster, W.R~~]]	+	__TOC__
-	[[Category: ~~Talon, R~~]]	+	</StructureSection>
-	[[Category: ~~Bezerra, G.A~~]]	+	[[Category: Large Structures]]
-	[[Category: Douangamath, A]]	+	[[Category: Bezerra GA]]
-	[[Category: Fearon, D]]	+	[[Category: Bountra C]]
-	[[Category: ~~Krojer, T~~]]	+	[[Category: Coker JA]]
-	[[Category: ~~Yue, W.W~~]]	+	[[Category: Douangamath A]]
-	[[Category: ~~Coker, J.A~~]]	+	[[Category: Fearon D]]
-	[[Category: ~~Tham, C.T~~]]	+	[[Category: Foster WR]]
-	[[Category: ~~Von Delft, F~~]]	+	[[Category: Koekemoer L]]
-	[[Category: ~~Bountra, C~~]]	+	[[Category: Krojer T]]
-	[[Category: ~~Koekemoer, L~~]]	+	[[Category: Talon R]]
		+	[[Category: Tham CT]]
		+	[[Category: Yue WW]]
		+	[[Category: Von Delft F]]

OCA: Protected "5sdj" [edit=sysop:move=sysop]

OCA — Thu, 27 Jan 2022 05:12:43 GMT

Protected "5sdj" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:12, 27 January 2022

OCA: New page: '''Unreleased structure''' The entry 5sdj is ON HOLD Authors: Tham, C.T., Coker, J.A., Krojer, T., Foster, W.R., Koekemoer, L., Douangamath, A., Talon, R., Fearon, D., von Delft, F., Yu...

OCA — Thu, 27 Jan 2022 05:12:42 GMT

New page: '''Unreleased structure''' The entry 5sdj is ON HOLD Authors: Tham, C.T., Coker, J.A., Krojer, T., Foster, W.R., Koekemoer, L., Douangamath, A., Talon, R., Fearon, D., von Delft, F., Yu...

New page

'''Unreleased structure'''

The entry 5sdj is ON HOLD

Authors: Tham, C.T., Coker, J.A., Krojer, T., Foster, W.R., Koekemoer, L., Douangamath, A., Talon, R., Fearon, D., von Delft, F., Yue, W.W., Bountra, C., Bezerra, G.A.

Description: PanDDA analysis group deposition --Crystal Structure of Porphyromonas gingivalis in complex with Z32327641
[[Category: Unreleased Structures]]
[[Category: Foster, W.R]]
[[Category: Talon, R]]
[[Category: Bezerra, G.A]]
[[Category: Douangamath, A]]
[[Category: Fearon, D]]
[[Category: Krojer, T]]
[[Category: Yue, W.W]]
[[Category: Coker, J.A]]
[[Category: Tham, C.T]]
[[Category: Von Delft, F]]
[[Category: Bountra, C]]
[[Category: Koekemoer, L]]