5sv1 - Revision history

OCA at 12:48, 4 October 2023

OCA — Wed, 04 Oct 2023 12:48:13 GMT

←Older revision		Revision as of 12:48, 4 October 2023
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	<StructureSection load='5sv1' size='340' side='right'caption='[[5sv1]], [[Resolution\|resolution]] 3.50Å' scene=''>		<StructureSection load='5sv1' size='340' side='right'caption='[[5sv1]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5sv1]] is a 12 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Ecod1 Ecod1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SV1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5SV1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5sv1]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_DH1 Escherichia coli DH1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SV1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5SV1 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=HG:MERCURY+(II)+ION'>HG</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.5Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MLY~~:~~N-DIMETHYL-LYSINE~~'>~~MLY~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat">[[5sv0\|5sv0]]</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5sv1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5sv1 OCA], [https://pdbe.org/5sv1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5sv1 RCSB], [https://www.ebi.ac.uk/pdbsum/5sv1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5sv1 ProSAT]</span></td></tr>
-	~~<tr id='gene~~'>~~<td class="sblockLbl"><b>[[Gene\|Gene:]]~~</b></td><td class="sblockDat">exbB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536056 ECOD1]), exbD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536056 ECOD1])</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5sv1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5sv1 OCA], [~~http~~://pdbe.org/5sv1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5sv1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5sv1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5sv1 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~EXBB_ECO57 EXBB_ECO57]~~] Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB ~~(By similarity). [[http://www.uniprot.org/uniprot/EXBD_ECO57 EXBD_ECO57]] Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates~~.	+	[https://www.uniprot.org/uniprot/EXBB_ECOLI EXBB_ECOLI] Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 29:		Line 27:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ecod1~~]]	+	[[Category: Escherichia coli DH1]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Botos, I]]	+	[[Category: Botos I]]
-	[[Category: Buchanan~~, S K~~]]	+	[[Category: Buchanan SK]]
-	[[Category: Celia, H]]	+	[[Category: Celia H]]
-	[[Category: Lloubes, R]]	+	[[Category: Lloubes R]]
-	[[Category: Noinaj, N]]	+	[[Category: Noinaj N]]
-	~~[[Category: Channel]]~~	+
-	~~[[Category: Exbb]]~~	+
-	~~[[Category: Membrane protein]]~~	+
-	~~[[Category: Pore]]~~	+
-	~~[[Category: Transport protein~~]]	+

OCA at 16:51, 11 December 2019

OCA — Wed, 11 Dec 2019 16:51:18 GMT

←Older revision		Revision as of 16:51, 11 December 2019
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	==Structure of the ExbB/ExbD complex from E. coli at pH 4.5==		==Structure of the ExbB/ExbD complex from E. coli at pH 4.5==
-	<StructureSection load='5sv1' size='340' side='right' caption='[[5sv1]], [[Resolution\|resolution]] 3.50Å' scene=''>	+	<StructureSection load='5sv1' size='340' side='right'caption='[[5sv1]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5sv1]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecod1 Ecod1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SV1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5SV1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[5sv1]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecod1 Ecod1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SV1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5SV1 FirstGlance]. <br>
Line 21:		Line 21:
	</div>		</div>
	<div class="pdbe-citations 5sv1" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5sv1" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[ExbB\|ExbB]]
		+	*[[ExbD\|ExbD]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Ecod1]]		[[Category: Ecod1]]
		+	[[Category: Large Structures]]
	[[Category: Botos, I]]		[[Category: Botos, I]]
	[[Category: Buchanan, S K]]		[[Category: Buchanan, S K]]

OCA at 14:17, 6 November 2017

OCA — Mon, 06 Nov 2017 14:17:56 GMT

←Older revision		Revision as of 14:17, 6 November 2017
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	<StructureSection load='5sv1' size='340' side='right' caption='[[5sv1]], [[Resolution\|resolution]] 3.50Å' scene=''>		<StructureSection load='5sv1' size='340' side='right' caption='[[5sv1]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5sv1]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SV1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5SV1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5sv1]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecod1 Ecod1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SV1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5SV1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5sv0\|5sv0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5sv0\|5sv0]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">exbB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536056 ECOD1]), exbD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=536056 ECOD1])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5sv1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5sv1 OCA], [http://pdbe.org/5sv1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5sv1 RCSB], [http://www.ebi.ac.uk/pdbsum/5sv1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5sv1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5sv1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5sv1 OCA], [http://pdbe.org/5sv1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5sv1 RCSB], [http://www.ebi.ac.uk/pdbsum/5sv1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5sv1 ProSAT]</span></td></tr>
	</table>		</table>
Line 24:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Ecod1]]
	[[Category: Botos, I]]		[[Category: Botos, I]]
	[[Category: Buchanan, S K]]		[[Category: Buchanan, S K]]

OCA at 13:55, 5 October 2016

OCA — Wed, 05 Oct 2016 13:55:33 GMT

←Older revision		Revision as of 13:55, 5 October 2016
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	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/EXBB_ECO57 EXBB_ECO57]] Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB (By similarity). [[http://www.uniprot.org/uniprot/EXBD_ECO57 EXBD_ECO57]] Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates.		[[http://www.uniprot.org/uniprot/EXBB_ECO57 EXBB_ECO57]] Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB (By similarity). [[http://www.uniprot.org/uniprot/EXBD_ECO57 EXBD_ECO57]] Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	In Gram-negative bacteria, outer membrane transporters import nutrients by coupling to an inner membrane protein complex called the Ton complex. The Ton complex consists of TonB, ExbB, and ExbD, and uses the proton motive force at the inner membrane to transduce energy to the outer membrane via TonB. Here, we structurally characterize the Ton complex from Escherichia coli using X-ray crystallography, electron microscopy, double electron-electron resonance (DEER) spectroscopy, and crosslinking. Our results reveal a stoichiometry consisting of a pentamer of ExbB, a dimer of ExbD, and at least one TonB. Electrophysiology studies show that the Ton subcomplex forms pH-sensitive cation-selective channels and provide insight into the mechanism by which it may harness the proton motive force to produce energy.
		+
		+	Structural insight into the role of the Ton complex in energy transduction.,Celia H, Noinaj N, Zakharov SD, Bordignon E, Botos I, Santamaria M, Barnard TJ, Cramer WA, Lloubes R, Buchanan SK Nature. 2016 Sep 21. doi: 10.1038/nature19757. PMID:27654919<ref>PMID:27654919</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5sv1" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 17:12, 3 October 2016

OCA — Mon, 03 Oct 2016 17:12:30 GMT

←Older revision		Revision as of 17:12, 3 October 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5sv1 is ~~ON HOLD until Paper Publication~~	+	==Structure of the ExbB/ExbD complex from E. coli at pH 4.5==
-		+	<StructureSection load='5sv1' size='340' side='right' caption='[[5sv1]], [[Resolution\|resolution]] 3.50Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5sv1]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SV1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5SV1 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5sv0\|5sv0]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5sv1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5sv1 OCA], [http://pdbe.org/5sv1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5sv1 RCSB], [http://www.ebi.ac.uk/pdbsum/5sv1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5sv1 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/EXBB_ECO57 EXBB_ECO57]] Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB (By similarity). [[http://www.uniprot.org/uniprot/EXBD_ECO57 EXBD_ECO57]] Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Botos, I]]
		+	[[Category: Buchanan, S K]]
		+	[[Category: Celia, H]]
		+	[[Category: Lloubes, R]]
		+	[[Category: Noinaj, N]]
		+	[[Category: Channel]]
		+	[[Category: Exbb]]
		+	[[Category: Membrane protein]]
		+	[[Category: Pore]]
		+	[[Category: Transport protein]]

OCA at 15:18, 9 September 2016

OCA — Fri, 09 Sep 2016 15:18:27 GMT

←Older revision		Revision as of 15:18, 9 September 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5sv1 is ON HOLD	+	The entry 5sv1 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5sv1" [edit=sysop:move=sysop]

OCA — Wed, 10 Aug 2016 14:43:40 GMT

Protected "5sv1" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:43, 10 August 2016

OCA: New page: '''Unreleased structure''' The entry 5sv1 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 10 Aug 2016 14:43:39 GMT

New page: '''Unreleased structure''' The entry 5sv1 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5sv1 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]