5tj1 - Revision history

OCA at 10:24, 14 June 2023

OCA — Wed, 14 Jun 2023 10:24:56 GMT

←Older revision		Revision as of 10:24, 14 June 2023
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	==Benenodin-1-dC5, state 1==		==Benenodin-1-dC5, state 1==
-	<StructureSection load='5tj1' size='340' side='right'caption='[[5tj1~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='5tj1' size='340' side='right'caption='[[5tj1]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5tj1]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Asticcacaulis_benevestitus_atcc_baa~~-896 Asticcacaulis benevestitus ~~atcc baa~~-896]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TJ1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5TJ1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5tj1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Asticcacaulis_benevestitus_DSM_16100_=_ATCC_BAA-896 Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TJ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5TJ1 FirstGlance]. <br>
-	</td></tr>~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5tj0\|5tj0]]</td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5tj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tj1 OCA], [https://pdbe.org/5tj1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5tj1 RCSB], [https://www.ebi.ac.uk/pdbsum/5tj1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5tj1 ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ABENE_08090 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1121022 Asticcacaulis benevestitus ATCC BAA-896])</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5tj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tj1 OCA], [~~http~~://pdbe.org/5tj1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5tj1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5tj1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5tj1 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/V4RMX4_9CAUL V4RMX4_9CAUL]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Asticcacaulis benevestitus ~~atcc baa~~-896]]	+	[[Category: Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Link~~, A J~~]]	+	[[Category: Link AJ]]
-	[[Category: Zong, C]]	+	[[Category: Zong C]]
-	~~[[Category: Lasso peptide ripp]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 12:32, 25 December 2019

OCA — Wed, 25 Dec 2019 12:32:40 GMT

←Older revision		Revision as of 12:32, 25 December 2019
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	==Benenodin-1-dC5, state 1==		==Benenodin-1-dC5, state 1==
-	<StructureSection load='5tj1' size='340' side='right' caption='[[5tj1]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='5tj1' size='340' side='right'caption='[[5tj1]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5tj1]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TJ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5TJ1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5tj1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Asticcacaulis_benevestitus_atcc_baa-896 Asticcacaulis benevestitus atcc baa-896]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TJ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5TJ1 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5tj0\|5tj0]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5tj0\|5tj0]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ABENE_08090 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1121022 Asticcacaulis benevestitus ATCC BAA-896])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5tj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tj1 OCA], [http://pdbe.org/5tj1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tj1 RCSB], [http://www.ebi.ac.uk/pdbsum/5tj1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tj1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5tj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tj1 OCA], [http://pdbe.org/5tj1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tj1 RCSB], [http://www.ebi.ac.uk/pdbsum/5tj1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tj1 ProSAT]</span></td></tr>
	</table>		</table>
Line 20:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Asticcacaulis benevestitus atcc baa-896]]
		+	[[Category: Large Structures]]
	[[Category: Link, A J]]		[[Category: Link, A J]]
	[[Category: Zong, C]]		[[Category: Zong, C]]
	[[Category: Lasso peptide ripp]]		[[Category: Lasso peptide ripp]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 09:02, 9 August 2017

OCA — Wed, 09 Aug 2017 09:02:14 GMT

←Older revision		Revision as of 09:02, 9 August 2017
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-	'''Unreleased structure'''

-	~~The entry~~ 5tj1 is ~~ON HOLD until Paper~~ Publication	+	==Benenodin-1-dC5, state 1==
		+	<StructureSection load='5tj1' size='340' side='right' caption='[[5tj1]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5tj1]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TJ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5TJ1 FirstGlance]. <br>
		+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5tj0\|5tj0]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5tj1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tj1 OCA], [http://pdbe.org/5tj1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tj1 RCSB], [http://www.ebi.ac.uk/pdbsum/5tj1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tj1 ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Mechanically interlocked molecules that change their conformation in response to stimuli have been developed by synthetic chemists as building blocks for molecular machines. Here we describe a natural product, the lasso peptide benenodin-1, which exhibits conformational switching between two distinct threaded conformers upon actuation by heat. We have determined the structures of both conformers and have characterized the kinetics and energetics of the conformational switch. Single amino acid substitutions to benenodin-1 generate peptides that are biased to a single conformer, showing that the switching behavior is potentially an evolvable trait in these peptides. Lasso peptides such as benenodin-1 can be recognized and cleaved by enzymes called lasso peptide isopeptidases. We show that only the native conformer of benenodin-1 is cleaved by its cognate isopeptidase. Thus, thermally induced conformational switching of benenodin-1 may also be relevant to the biological function of these molecules.

-	~~Authors~~:	+	Lasso Peptide Benenodin-1 Is a Thermally Actuated [1]Rotaxane Switch.,Zong C, Wu MJ, Qin JZ, Link AJ J Am Chem Soc. 2017 Aug 2;139(30):10403-10409. doi: 10.1021/jacs.7b04830. Epub, 2017 Jul 24. PMID:28696674<ref>PMID:28696674</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5tj1" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Link, A J]]
		+	[[Category: Zong, C]]
		+	[[Category: Lasso peptide ripp]]
		+	[[Category: Unknown function]]

OCA: Protected "5tj1" [edit=sysop:move=sysop]

OCA — Wed, 19 Oct 2016 15:54:08 GMT

Protected "5tj1" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:54, 19 October 2016

OCA: New page: '''Unreleased structure''' The entry 5tj1 is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

OCA — Wed, 19 Oct 2016 15:54:07 GMT

New page: '''Unreleased structure''' The entry 5tj1 is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5tj1 is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]