5tlc - Revision history

OCA at 15:41, 6 March 2024

OCA — Wed, 06 Mar 2024 15:41:50 GMT

←Older revision		Revision as of 15:41, 6 March 2024
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	<StructureSection load='5tlc' size='340' side='right'caption='[[5tlc]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='5tlc' size='340' side='right'caption='[[5tlc]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5tlc]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TLC OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5TLC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5tlc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TLC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5TLC FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5tlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tlc OCA], [~~http~~://pdbe.org/5tlc PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5tlc RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5tlc PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5tlc ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5tlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tlc OCA], [https://pdbe.org/5tlc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5tlc RCSB], [https://www.ebi.ac.uk/pdbsum/5tlc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5tlc ProSAT]</span></td></tr>
	</table>		</table>
-	~~<div style~~=~~"background-color:#fffaf0;">~~	+	== Function ==
-	=~~= Publication Abstract from PubMed~~ ==	+	[https://www.uniprot.org/uniprot/Q8GRC7_BACIU Q8GRC7_BACIU]
-	The dibenzothiophene (DBT) sulfone monooxygenase BdsA from Bacillus subtilis WU-S2B catalyzes the conversion of DBT sulfone to 2'-hydroxybiphenyl 2-sulfinate. We report the crystal structures of BdsA at a resolution of 2.80 A. BdsA exists as a homotetramer with a dimer-of-dimers configuration in the crystal, and the interaction between E288 and R296 in BdsA is important for tetramer formation. A structural comparison with homologous proteins shows that the orientation and location of the alpha9-alpha12 helices in BdsA are closer to those of the closed form than those of the open form in the EDTA monooxygenase EmoA. Proteins 2017. (c) 2017 Wiley Periodicals, Inc.	+
-		+
-	~~Crystal structure of dibenzothiophene sulfone monooxygenase BdsA from Bacillus subtilis WU-S2B.,Okai M, Lee WC, Guan LJ, Ohshiro T, Izumi Y, Tanokura M Proteins. 2017 Feb 16. doi~~: ~~10.1002~~/~~prot.25267. PMID:28205250<ref>PMID:28205250<~~/~~ref>~~	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U~~.S. ~~National Library of Medicine.<br>~~	+
-	</~~div>~~	+
-	~~<div class="pdbe-citations 5tlc" style="background-color:#fffaf0;"></div>~~	+
-	~~== References ==~~	+
-	~~<references~~/>	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus subtilis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Lee~~, W C~~]]	+	[[Category: Lee WC]]
-	[[Category: Okai, M]]	+	[[Category: Okai M]]
-	[[Category: Tanokura, M]]	+	[[Category: Tanokura M]]
-	~~[[Category: Monooxygenase]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 12:12, 23 September 2020

OCA — Wed, 23 Sep 2020 12:12:57 GMT

←Older revision		Revision as of 12:12, 23 September 2020
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	==Crystal structure of BdsA from Bacillus subtilis WU-S2B==		==Crystal structure of BdsA from Bacillus subtilis WU-S2B==
-	<StructureSection load='5tlc' size='340' side='right' caption='[[5tlc]], [[Resolution\|resolution]] 2.80Å' scene=''>	+	<StructureSection load='5tlc' size='340' side='right'caption='[[5tlc]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5tlc]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TLC OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5TLC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5tlc]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TLC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5TLC FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5tlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tlc OCA], [http://pdbe.org/5tlc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tlc RCSB], [http://www.ebi.ac.uk/pdbsum/5tlc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tlc ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5tlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tlc OCA], [http://pdbe.org/5tlc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tlc RCSB], [http://www.ebi.ac.uk/pdbsum/5tlc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tlc ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Lee, W C]]		[[Category: Lee, W C]]
	[[Category: Okai, M]]		[[Category: Okai, M]]

OCA at 12:57, 4 May 2017

OCA — Thu, 04 May 2017 12:57:34 GMT

←Older revision		Revision as of 12:57, 4 May 2017
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-	'''Unreleased structure'''

-	~~The entry~~ 5tlc is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of BdsA from Bacillus subtilis WU-S2B==
		+	<StructureSection load='5tlc' size='340' side='right' caption='[[5tlc]], [[Resolution\|resolution]] 2.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5tlc]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TLC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5TLC FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5tlc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tlc OCA], [http://pdbe.org/5tlc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tlc RCSB], [http://www.ebi.ac.uk/pdbsum/5tlc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tlc ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The dibenzothiophene (DBT) sulfone monooxygenase BdsA from Bacillus subtilis WU-S2B catalyzes the conversion of DBT sulfone to 2'-hydroxybiphenyl 2-sulfinate. We report the crystal structures of BdsA at a resolution of 2.80 A. BdsA exists as a homotetramer with a dimer-of-dimers configuration in the crystal, and the interaction between E288 and R296 in BdsA is important for tetramer formation. A structural comparison with homologous proteins shows that the orientation and location of the alpha9-alpha12 helices in BdsA are closer to those of the closed form than those of the open form in the EDTA monooxygenase EmoA. Proteins 2017. (c) 2017 Wiley Periodicals, Inc.

-	~~Authors~~:	+	Crystal structure of dibenzothiophene sulfone monooxygenase BdsA from Bacillus subtilis WU-S2B.,Okai M, Lee WC, Guan LJ, Ohshiro T, Izumi Y, Tanokura M Proteins. 2017 Feb 16. doi: 10.1002/prot.25267. PMID:28205250<ref>PMID:28205250</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5tlc" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Lee, W C]]
		+	[[Category: Okai, M]]
		+	[[Category: Tanokura, M]]
		+	[[Category: Monooxygenase]]
		+	[[Category: Oxidoreductase]]

OCA at 16:52, 2 November 2016

OCA — Wed, 02 Nov 2016 16:52:13 GMT

←Older revision		Revision as of 16:52, 2 November 2016
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5tlc is ON HOLD	+	The entry 5tlc is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5tlc" [edit=sysop:move=sysop]

OCA — Wed, 19 Oct 2016 16:00:05 GMT

Protected "5tlc" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:00, 19 October 2016

OCA: New page: '''Unreleased structure''' The entry 5tlc is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 19 Oct 2016 16:00:03 GMT

New page: '''Unreleased structure''' The entry 5tlc is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5tlc is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]