5tvd - Revision history

OCA at 13:13, 4 October 2023

OCA — Wed, 04 Oct 2023 13:13:21 GMT

←Older revision		Revision as of 13:13, 4 October 2023
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	<StructureSection load='5tvd' size='340' side='right'caption='[[5tvd]], [[Resolution\|resolution]] 1.73Å' scene=''>		<StructureSection load='5tvd' size='340' side='right'caption='[[5tvd]], [[Resolution\|resolution]] 1.73Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5tvd]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Mouse_whipworm Mouse whipworm~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TVD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5TVD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5tvd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichuris_muris Trichuris muris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TVD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5TVD FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5tvd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tvd OCA], [~~http~~://pdbe.org/5tvd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5tvd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5tvd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5tvd ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.734Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5tvd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tvd OCA], [https://pdbe.org/5tvd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5tvd RCSB], [https://www.ebi.ac.uk/pdbsum/5tvd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5tvd ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Mouse whipworm~~]]	+	[[Category: Trichuris muris]]
-	[[Category: Asojo~~, O A]]~~	+	[[Category: Asojo OA]]
-	~~[[Category: Phosphatidylethanolamine-binding protein]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 12:20, 23 September 2020

OCA — Wed, 23 Sep 2020 12:20:48 GMT

←Older revision		Revision as of 12:20, 23 September 2020
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	==Crystal structure of Tm16==		==Crystal structure of Tm16==
-	<StructureSection load='5tvd' size='340' side='right' caption='[[5tvd]], [[Resolution\|resolution]] 1.73Å' scene=''>	+	<StructureSection load='5tvd' size='340' side='right'caption='[[5tvd]], [[Resolution\|resolution]] 1.73Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5tvd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mouse_whipworm Mouse whipworm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TVD OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5TVD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5tvd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mouse_whipworm Mouse whipworm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TVD OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5TVD FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5tvd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tvd OCA], [http://pdbe.org/5tvd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tvd RCSB], [http://www.ebi.ac.uk/pdbsum/5tvd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tvd ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5tvd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tvd OCA], [http://pdbe.org/5tvd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tvd RCSB], [http://www.ebi.ac.uk/pdbsum/5tvd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tvd ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Mouse whipworm]]		[[Category: Mouse whipworm]]
	[[Category: Asojo, O A]]		[[Category: Asojo, O A]]
	[[Category: Phosphatidylethanolamine-binding protein]]		[[Category: Phosphatidylethanolamine-binding protein]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 14:27, 6 November 2017

OCA — Mon, 06 Nov 2017 14:27:53 GMT

←Older revision		Revision as of 14:27, 6 November 2017
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	<StructureSection load='5tvd' size='340' side='right' caption='[[5tvd]], [[Resolution\|resolution]] 1.73Å' scene=''>		<StructureSection load='5tvd' size='340' side='right' caption='[[5tvd]], [[Resolution\|resolution]] 1.73Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5tvd]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TVD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5TVD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5tvd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mouse_whipworm Mouse whipworm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TVD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5TVD FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5tvd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tvd OCA], [http://pdbe.org/5tvd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tvd RCSB], [http://www.ebi.ac.uk/pdbsum/5tvd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tvd ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5tvd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tvd OCA], [http://pdbe.org/5tvd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tvd RCSB], [http://www.ebi.ac.uk/pdbsum/5tvd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tvd ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Mouse whipworm]]
	[[Category: Asojo, O A]]		[[Category: Asojo, O A]]
	[[Category: Phosphatidylethanolamine-binding protein]]		[[Category: Phosphatidylethanolamine-binding protein]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 04:34, 21 September 2017

OCA — Thu, 21 Sep 2017 04:34:25 GMT

←Older revision		Revision as of 04:34, 21 September 2017
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	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5tvd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tvd OCA], [http://pdbe.org/5tvd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tvd RCSB], [http://www.ebi.ac.uk/pdbsum/5tvd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tvd ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5tvd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tvd OCA], [http://pdbe.org/5tvd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tvd RCSB], [http://www.ebi.ac.uk/pdbsum/5tvd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tvd ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Trichuriasis is a disease of poverty for which excretory and secretory (ES) products that induce the protective immunity are being investigated as candidate vaccines antigens. In this study, ES products of T. muris and immune sera were produced. The immune sera recognized more than 20 proteins on a 2D-gel of ES products of T. muris adult worms. Tm16 was one of the proteins identified by mass spectrometry. Tm16 shares 57% sequence identity with Ov16, an immunodominant diagnostic antigen from Onchocerca volvulus. Recombinant Tm16 with a carboxyl terminal hexahistidine was produced using Pichia pastoris. Polyclonal antibodies against rTm16 were generated by one-prime and two-boost immunization of three female Balb/c mice with 25 mug of recombinant Tm16 emulsified with ISA720 adjuvant. These polyclonal antibodies confirmed that Tm16 is localized to the ES products and the soluble fraction of the adult worm. Additionally, the high-resolution crystal structure of Tm16 was solved by molecular replacement. Tm16 belongs to the phosphatidylethanolamine-binding-like protein (PEBP1) family and this is the first structure of a PEBP1 from a parasite.
		+
		+	Identification, Characterization, and Structure of Tm16 from Trichuris muris.,Liu Z, Kelleher A, Tabb S, Wei J, Pollet J, Hotez PJ, Bottazzi ME, Zhan B, Asojo OA J Parasitol Res. 2017;2017:4342789. doi: 10.1155/2017/4342789. Epub 2017 Aug 14. PMID:28884022<ref>PMID:28884022</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5tvd" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 14:34, 5 September 2017

OCA — Tue, 05 Sep 2017 14:34:02 GMT

←Older revision		Revision as of 14:34, 5 September 2017
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-	'''Unreleased structure'''

-	~~The entry 5tvd is ON HOLD until Paper Publication~~	+	==Crystal structure of Tm16==
-		+	<StructureSection load='5tvd' size='340' side='right' caption='[[5tvd]], [[Resolution\|resolution]] 1.73Å' scene=''>
-	~~Authors: Asojo~~, ~~O.A~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5tvd]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TVD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5TVD FirstGlance]. <br>
-	~~Description~~: ~~Crystal~~ structure ~~of Tm16~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5tvd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tvd OCA], [http://pdbe.org/5tvd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tvd RCSB], [http://www.ebi.ac.uk/pdbsum/5tvd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tvd ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[Category: Asojo, O.A]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Asojo, O A]]
		+	[[Category: Phosphatidylethanolamine-binding protein]]
		+	[[Category: Unknown function]]

OCA: Protected "5tvd" [edit=sysop:move=sysop]

OCA — Fri, 09 Dec 2016 17:55:51 GMT

Protected "5tvd" [edit=sysop:move=sysop]

←Older revision

Revision as of 17:55, 9 December 2016

OCA: New page: '''Unreleased structure''' The entry 5tvd is ON HOLD until Paper Publication Authors: Asojo, O.A. Description: Crystal structure of Tm16 Category: Unreleased Structures [[Category:...

OCA — Fri, 09 Dec 2016 17:55:50 GMT

New page: '''Unreleased structure''' The entry 5tvd is ON HOLD until Paper Publication Authors: Asojo, O.A. Description: Crystal structure of Tm16 Category: Unreleased Structures [[Category:...

New page

'''Unreleased structure'''

The entry 5tvd is ON HOLD until Paper Publication

Authors: Asojo, O.A.

Description: Crystal structure of Tm16
[[Category: Unreleased Structures]]
[[Category: Asojo, O.A]]