5v50 - Revision history

OCA at 13:41, 4 October 2023

OCA — Wed, 04 Oct 2023 13:41:42 GMT

←Older revision		Revision as of 13:41, 4 October 2023
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	<StructureSection load='5v50' size='340' side='right'caption='[[5v50]], [[Resolution\|resolution]] 2.43Å' scene=''>		<StructureSection load='5v50' size='340' side='right'caption='[[5v50]], [[Resolution\|resolution]] 2.43Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5v50]] is a 7 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Crinipellis_perniciosa Crinipellis~~ perniciosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V50 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5V50 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5v50]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Moniliophthora_perniciosa Moniliophthora perniciosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V50 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5V50 FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~>[[5v51\|5v51]]</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.43Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">PR-1i ([http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=153609 Crinipellis perniciosa])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5v50 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v50 OCA], [https://pdbe.org/5v50 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5v50 RCSB], [https://www.ebi.ac.uk/pdbsum/5v50 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5v50 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5v50 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v50 OCA], [~~http~~://pdbe.org/5v50 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5v50 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5v50 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5v50 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/H6U756_MONPR H6U756_MONPR]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Crinipellis perniciosa]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Asojo, O~~]]	+	[[Category: Moniliophthora perniciosa]]
-	[[Category: ~~Luo, Z~~]]	+	[[Category: Asojo O]]
-	[[Category: ~~Cacao infection]]~~	+	[[Category: Luo Z]]
-	~~[[Category: Lipid binding protein]]~~	+
-	~~[[Category: Pathogenesis-related protein 1~~]]	+

OCA at 06:29, 17 April 2019

OCA — Wed, 17 Apr 2019 06:29:11 GMT

←Older revision		Revision as of 06:29, 17 April 2019
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	==Crystal Structure of MpPR-1i==		==Crystal Structure of MpPR-1i==
-	<StructureSection load='5v50' size='340' side='right' caption='[[5v50]], [[Resolution\|resolution]] 2.43Å' scene=''>	+	<StructureSection load='5v50' size='340' side='right'caption='[[5v50]], [[Resolution\|resolution]] 2.43Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5v50]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Crinipellis_perniciosa Crinipellis perniciosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V50 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V50 FirstGlance]. <br>		<table><tr><td colspan='2'>[[5v50]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Crinipellis_perniciosa Crinipellis perniciosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V50 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V50 FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Crinipellis perniciosa]]		[[Category: Crinipellis perniciosa]]
		+	[[Category: Large Structures]]
	[[Category: Asojo, O]]		[[Category: Asojo, O]]
	[[Category: Luo, Z]]		[[Category: Luo, Z]]

OCA at 08:14, 17 January 2018

OCA — Wed, 17 Jan 2018 08:14:47 GMT

←Older revision		Revision as of 08:14, 17 January 2018
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	<StructureSection load='5v50' size='340' side='right' caption='[[5v50]], [[Resolution\|resolution]] 2.43Å' scene=''>		<StructureSection load='5v50' size='340' side='right' caption='[[5v50]], [[Resolution\|resolution]] 2.43Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5v50]] is a 7 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V50 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V50 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5v50]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Crinipellis_perniciosa Crinipellis perniciosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V50 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V50 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5v51\|5v51]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5v51\|5v51]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PR-1i ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=153609 Crinipellis perniciosa])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5v50 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v50 OCA], [http://pdbe.org/5v50 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v50 RCSB], [http://www.ebi.ac.uk/pdbsum/5v50 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v50 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5v50 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v50 OCA], [http://pdbe.org/5v50 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v50 RCSB], [http://www.ebi.ac.uk/pdbsum/5v50 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v50 ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Crinipellis perniciosa]]
	[[Category: Asojo, O]]		[[Category: Asojo, O]]
	[[Category: Luo, Z]]		[[Category: Luo, Z]]

OCA at 04:02, 30 August 2017

OCA — Wed, 30 Aug 2017 04:02:46 GMT

←Older revision		Revision as of 04:02, 30 August 2017
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-	'''Unreleased structure'''

-	~~The entry~~ 5v50 is ~~ON HOLD until Paper~~ Publication	+	==Crystal Structure of MpPR-1i==
		+	<StructureSection load='5v50' size='340' side='right' caption='[[5v50]], [[Resolution\|resolution]] 2.43Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5v50]] is a 7 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V50 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V50 FirstGlance]. <br>
		+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5v51\|5v51]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5v50 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v50 OCA], [http://pdbe.org/5v50 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v50 RCSB], [http://www.ebi.ac.uk/pdbsum/5v50 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v50 ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The pathogenic fungi Moniliophthora perniciosa causes Witches' Broom Disease (WBD) of cacao. The structure of MpPR-1i, a protein expressed by M. perniciosa when it infects cacao, are presented. This is the first reported de novo structure determined by single-wavelength anomalous dispersion phasing upon soaking with selenourea. Each monomer has flexible loop regions linking the core alpha-beta-alpha sandwich topology that comprise ~50% of the structure, making it difficult to generate an accurate homology model of the protein. MpPR-1i is monomeric in solution but is packed as a high ~70% solvent content, crystallographic heptamer. The greatest conformational flexibility between monomers is found in loops exposed to the solvent channel that connect the two longest strands. MpPR-1i lacks the conserved CAP tetrad and is incapable of binding divalent cations. MpPR-1i has the ability to bind lipids, which may have roles in its infection of cacao. These lipids likely bind in the palmitate binding cavity as observed in tablysin-15, since MpPR-1i binds palmitate with comparable affinity as tablysin-15. Further studies are required to clarify the possible roles and underlying mechanisms of neutral lipid binding, as well as their effects on the pathogenesis of M. perniciosa so as to develop new interventions for WBD.

-	~~Authors: Luo~~, Z., ~~Asojo~~, O.	+	Crystal Structure of MpPR-1i, a SCP/TAPS protein from Moniliophthora perniciosa, the fungus that causes Witches' Broom Disease of Cacao.,Baroni RM, Luo Z, Darwiche R, Hudspeth EM, Schneiter R, Pereira GAG, Mondego JMC, Asojo OA Sci Rep. 2017 Aug 10;7(1):7818. doi: 10.1038/s41598-017-07887-1. PMID:28798297<ref>PMID:28798297</ref>

-	~~Description: Crystal Structure~~ of ~~MpPR-1i~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
		+	<div class="pdbe-citations 5v50" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Asojo, O]]		[[Category: Asojo, O]]
	[[Category: Luo, Z]]		[[Category: Luo, Z]]
		+	[[Category: Cacao infection]]
		+	[[Category: Lipid binding protein]]
		+	[[Category: Pathogenesis-related protein 1]]

OCA: Protected "5v50" [edit=sysop:move=sysop]

OCA — Wed, 05 Apr 2017 11:36:11 GMT

Protected "5v50" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:36, 5 April 2017

OCA: New page: '''Unreleased structure''' The entry 5v50 is ON HOLD until Paper Publication Authors: Luo, Z., Asojo, O. Description: Crystal Structure of MpPR-1i Category: Unreleased Structures [...

OCA — Wed, 05 Apr 2017 11:36:10 GMT

New page: '''Unreleased structure''' The entry 5v50 is ON HOLD until Paper Publication Authors: Luo, Z., Asojo, O. Description: Crystal Structure of MpPR-1i Category: Unreleased Structures [...

New page

'''Unreleased structure'''

The entry 5v50 is ON HOLD until Paper Publication

Authors: Luo, Z., Asojo, O.

Description: Crystal Structure of MpPR-1i
[[Category: Unreleased Structures]]
[[Category: Asojo, O]]
[[Category: Luo, Z]]