5v5s - Revision history

OCA at 22:01, 10 April 2020

OCA — Fri, 10 Apr 2020 22:01:10 GMT

←Older revision		Revision as of 22:01, 10 April 2020
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	<SX load='5v5s' size='340' side='right' viewer='molstar' caption='[[5v5s]], [[Resolution\|resolution]] 6.50Å' scene=''>		<SX load='5v5s' size='340' side='right' viewer='molstar' caption='[[5v5s]], [[Resolution\|resolution]] 6.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5v5s]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V5S OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5V5S FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5v5s]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V5S OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5V5S FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tolC, colE1-i, mtcB, mukA, refI, toc, weeA, b3035, JW5503 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895]), acrA, Z0578, ECs0516 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895]), acrB, acrE, b0462, JW0451 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tolC, colE1-i, mtcB, mukA, refI, toc, weeA, b3035, JW5503 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895]), acrA, Z0578, ECs0516 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895]), acrB, acrE, b0462, JW0451 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5v5s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v5s OCA], [http://pdbe.org/5v5s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v5s RCSB], [http://www.ebi.ac.uk/pdbsum/5v5s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v5s ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5v5s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v5s OCA], [http://pdbe.org/5v5s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v5s RCSB], [http://www.ebi.ac.uk/pdbsum/5v5s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v5s ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 19:48, 6 March 2020

OCA — Fri, 06 Mar 2020 19:48:56 GMT

←Older revision		Revision as of 19:48, 6 March 2020
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	==multi-drug efflux; membrane transport; RND superfamily; Drug resistance==		==multi-drug efflux; membrane transport; RND superfamily; Drug resistance==
-	<~~StructureSection~~ load='5v5s' size='340' side='right'caption='[[5v5s]], [[Resolution\|resolution]] 6.50Å' scene=''>	+	<SX load='5v5s' size='340' side='right' viewer='molstar' caption='[[5v5s]], [[Resolution\|resolution]] 6.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5v5s]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V5S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V5S FirstGlance]. <br>		<table><tr><td colspan='2'>[[5v5s]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V5S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V5S FirstGlance]. <br>
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	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 07:46, 23 October 2019

OCA — Wed, 23 Oct 2019 07:46:18 GMT

←Older revision		Revision as of 07:46, 23 October 2019
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	==multi-drug efflux; membrane transport; RND superfamily; Drug resistance==		==multi-drug efflux; membrane transport; RND superfamily; Drug resistance==
-	<StructureSection load='5v5s' size='340' side='right' caption='[[5v5s]], [[Resolution\|resolution]] 6.50Å' scene=''>	+	<StructureSection load='5v5s' size='340' side='right'caption='[[5v5s]], [[Resolution\|resolution]] 6.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5v5s]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V5S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V5S FirstGlance]. <br>		<table><tr><td colspan='2'>[[5v5s]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V5S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V5S FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
		+	[[Category: Large Structures]]
	[[Category: Blaza, J N]]		[[Category: Blaza, J N]]
	[[Category: Chiu, W]]		[[Category: Chiu, W]]

OCA at 07:35, 21 February 2019

OCA — Thu, 21 Feb 2019 07:35:05 GMT

←Older revision		Revision as of 07:35, 21 February 2019
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	<StructureSection load='5v5s' size='340' side='right' caption='[[5v5s]], [[Resolution\|resolution]] 6.50Å' scene=''>		<StructureSection load='5v5s' size='340' side='right' caption='[[5v5s]], [[Resolution\|resolution]] 6.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5v5s]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V5S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V5S FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5v5s]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V5S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V5S FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tolC, colE1-i, mtcB, mukA, refI, toc, weeA, b3035, JW5503 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895]), acrA, Z0578, ECs0516 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895]), acrB, acrE, b0462, JW0451 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5v5s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v5s OCA], [http://pdbe.org/5v5s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v5s RCSB], [http://www.ebi.ac.uk/pdbsum/5v5s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v5s ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5v5s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v5s OCA], [http://pdbe.org/5v5s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v5s RCSB], [http://www.ebi.ac.uk/pdbsum/5v5s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v5s ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus coli migula 1895]]
	[[Category: Blaza, J N]]		[[Category: Blaza, J N]]
	[[Category: Chiu, W]]		[[Category: Chiu, W]]

OCA at 13:05, 19 April 2017

OCA — Wed, 19 Apr 2017 13:05:07 GMT

←Older revision		Revision as of 13:05, 19 April 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5v5s is ~~ON HOLD~~	+	==multi-drug efflux; membrane transport; RND superfamily; Drug resistance==
		+	<StructureSection load='5v5s' size='340' side='right' caption='[[5v5s]], [[Resolution\|resolution]] 6.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5v5s]] is a 12 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V5S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V5S FirstGlance]. <br>
		+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5v5s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v5s OCA], [http://pdbe.org/5v5s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v5s RCSB], [http://www.ebi.ac.uk/pdbsum/5v5s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v5s ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/TOLC_ECOLI TOLC_ECOLI]] Outer membrane channel, which is required for the function of several efflux systems such as AcrAB-TolC, AcrEF-TolC, EmrAB-TolC and MacAB-TolC. These systems are involved in export of antibiotics and other toxic compounds from the cell. TolC is also involved in import of colicin E1 into the cells.<ref>PMID:6337123</ref> <ref>PMID:11274125</ref> <ref>PMID:15228545</ref> <ref>PMID:18955484</ref> <ref>PMID:23176499</ref> [[http://www.uniprot.org/uniprot/ACRB_ECOLI ACRB_ECOLI]] AcrAB is a drug efflux protein with a broad substrate specificity.<ref>PMID:16915237</ref> <ref>PMID:16946072</ref> <ref>PMID:17194213</ref> [[http://www.uniprot.org/uniprot/ACRA_ECO57 ACRA_ECO57]] AcrA-AcrB-AcrZ-TolC is a drug efflux protein complex with broad substrate specificity that uses the proton motive force to export substrates. This subunit may act as an adapter protein that links AcrB and TolC stably together (By similarity).
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Bacterial efflux pumps confer multidrug resistance by transporting diverse antibiotics from the cell. In Gram-negative bacteria, some of these pumps form multi-protein assemblies that span the cell envelope. Here we report the near-atomic resolution cryoEM structures of the Escherichia coli AcrAB-TolC multidrug efflux pump in resting and drug transport states, revealing a quaternary structural switch that allosterically couples and synchronizes initial ligand binding with channel opening. Within the transport-activated state, the channel remains open even though the pump cycles through three distinct conformations. Collectively, our data provide a dynamic mechanism for the assembly and operation of the AcrAB-TolC pump.

-	~~Authors: wang~~, Z~~., fan~~, G., Hryc~~, C.F.~~, Blaza~~, J.N.~~, Serysheva~~, I.I.~~, Schmid~~, M.F.~~, Chiu, W., Luisi~~, B.F.~~, Du, D.	+	An allosteric transport mechanism for the AcrAB-TolC Multidrug Efflux Pump.,Wang Z, Fan G, Hryc CF, Blaza JN, Serysheva II, Schmid MF, Chiu W, Luisi BF, Du D Elife. 2017 Mar 29;6. pii: e24905. doi: 10.7554/eLife.24905. PMID:28355133<ref>PMID:28355133</ref>

-	~~Description: multi-drug efflux~~; ~~membrane transport~~; ~~RND superfamily~~; ~~Drug resistance~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5v5s" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Blaza, J N]]
		+	[[Category: Chiu, W]]
	[[Category: Du, D]]		[[Category: Du, D]]
-	[[Category: Luisi, B.F]]	+	[[Category: Hryc, C F]]
		+	[[Category: Luisi, B F]]
		+	[[Category: Schmid, M F]]
		+	[[Category: Serysheva, I I]]
	[[Category: Fan, G]]		[[Category: Fan, G]]
-	[[Category: Chiu, W]]
-	[[Category: Blaza, J.N]]
-	[[Category: Hryc, C.F]]
-	[[Category: Schmid, M.F]]
-	[[Category: Serysheva, I.I]]
	[[Category: Wang, Z]]		[[Category: Wang, Z]]
		+	[[Category: Drug resistance]]
		+	[[Category: Membrane protein]]
		+	[[Category: Membrane transport]]
		+	[[Category: Multi-drug efflux]]
		+	[[Category: Rnd superfamily]]

OCA: Protected "5v5s" [edit=sysop:move=sysop]

OCA — Wed, 05 Apr 2017 11:38:09 GMT

Protected "5v5s" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:38, 5 April 2017

OCA: New page: '''Unreleased structure''' The entry 5v5s is ON HOLD Authors: wang, Z., fan, G., Hryc, C.F., Blaza, J.N., Serysheva, I.I., Schmid, M.F., Chiu, W., Luisi, B.F., Du, D. Description: mult...

OCA — Wed, 05 Apr 2017 11:38:08 GMT

New page: '''Unreleased structure''' The entry 5v5s is ON HOLD Authors: wang, Z., fan, G., Hryc, C.F., Blaza, J.N., Serysheva, I.I., Schmid, M.F., Chiu, W., Luisi, B.F., Du, D. Description: mult...

New page

'''Unreleased structure'''

The entry 5v5s is ON HOLD

Authors: wang, Z., fan, G., Hryc, C.F., Blaza, J.N., Serysheva, I.I., Schmid, M.F., Chiu, W., Luisi, B.F., Du, D.

Description: multi-drug efflux; membrane transport; RND superfamily; Drug resistance
[[Category: Unreleased Structures]]
[[Category: Du, D]]
[[Category: Luisi, B.F]]
[[Category: Fan, G]]
[[Category: Chiu, W]]
[[Category: Blaza, J.N]]
[[Category: Hryc, C.F]]
[[Category: Schmid, M.F]]
[[Category: Serysheva, I.I]]
[[Category: Wang, Z]]