5v8t - Revision history

OCA at 13:43, 4 October 2023

OCA — Wed, 04 Oct 2023 13:43:56 GMT

←Older revision		Revision as of 13:43, 4 October 2023
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	<StructureSection load='5v8t' size='340' side='right'caption='[[5v8t]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='5v8t' size='340' side='right'caption='[[5v8t]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5v8t]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Burps Burps~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V8T OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5V8T FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5v8t]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_pseudomallei Burkholderia pseudomallei] and [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V8T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5V8T FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8ZV:2-{[3,5-bis(2-methoxyethoxy)benzene-1-carbonyl]amino}ethyl+(2S)-1-(benzylsulfonyl)piperidine-2-carboxylate'>8ZV</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fbp_2, DP46_4351, DP49_3058, ERS012314_03208, SY87_03945 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272560 BURPS])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8ZV:2-{[3,5-bis(2-methoxyethoxy)benzene-1-carbonyl]amino}ethyl+(2S)-1-(benzylsulfonyl)piperidine-2-carboxylate'>8ZV</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5v8t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v8t OCA], [https://pdbe.org/5v8t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5v8t RCSB], [https://www.ebi.ac.uk/pdbsum/5v8t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5v8t ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5v8t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v8t OCA], [~~http~~://pdbe.org/5v8t PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5v8t RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5v8t PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5v8t ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/SMT3_YEAST SMT3_YEAST]] Not known; suppressor of MIF2 mutations.	+	[https://www.uniprot.org/uniprot/SMT3_YEAST SMT3_YEAST] Not known; suppressor of MIF2 mutations.[https://www.uniprot.org/uniprot/Q63J95_BURPS Q63J95_BURPS]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Burps~~]]	+	[[Category: Burkholderia pseudomallei]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Peptidylprolyl isomerase~~]]	+	[[Category: Saccharomyces cerevisiae S288C]]
-	[[Category: Abendroth, J]]	+	[[Category: Abendroth J]]
-	[[Category: Dranow~~, D M~~]]	+	[[Category: Dranow DM]]
-	[[Category: Holzgrabe, U]]	+	[[Category: Holzgrabe U]]
-	[[Category: Lorimer~~, D D~~]]	+	[[Category: Lorimer DD]]
-	[[Category: Seufert, F]]	+	[[Category: Seufert F]]
-	~~[[Category: Burkholderia]]~~	+
-	~~[[Category: Isomerase]]~~	+
-	~~[[Category: Peptidyl]]~~	+
-	~~[[Category: Proline~~]]	+

OCA at 08:32, 30 September 2020

OCA — Wed, 30 Sep 2020 08:32:35 GMT

←Older revision		Revision as of 08:32, 30 September 2020
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	==Crystal structure of SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with SF354==		==Crystal structure of SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with SF354==
-	<StructureSection load='5v8t' size='340' side='right' caption='[[5v8t]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='5v8t' size='340' side='right'caption='[[5v8t]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5v8t]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V8T OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca.weizmann~~.~~ac.il/oca-docs~~/fgij/fg.htm?mol=5V8T FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5v8t]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burps Burps]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V8T OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5V8T FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8ZV:2-{[3,5-bis(2-methoxyethoxy)benzene-1-carbonyl]amino}ethyl+(2S)-1-(benzylsulfonyl)piperidine-2-carboxylate'>8ZV</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8ZV:2-{[3,5-bis(2-methoxyethoxy)benzene-1-carbonyl]amino}ethyl+(2S)-1-(benzylsulfonyl)piperidine-2-carboxylate'>8ZV</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fbp_2, DP46_4351, DP49_3058, ERS012314_03208, SY87_03945 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272560 BURPS])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5v8t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v8t OCA], [http://pdbe.org/5v8t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v8t RCSB], [http://www.ebi.ac.uk/pdbsum/5v8t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v8t ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5v8t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v8t OCA], [http://pdbe.org/5v8t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v8t RCSB], [http://www.ebi.ac.uk/pdbsum/5v8t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v8t ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Burps]]
		+	[[Category: Large Structures]]
	[[Category: Peptidylprolyl isomerase]]		[[Category: Peptidylprolyl isomerase]]
	[[Category: Abendroth, J]]		[[Category: Abendroth, J]]

OCA at 06:23, 14 March 2018

OCA — Wed, 14 Mar 2018 06:23:50 GMT

←Older revision		Revision as of 06:23, 14 March 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 5v8t is ON HOLD until Paper Publication~~	+	==Crystal structure of SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with SF354==
-		+	<StructureSection load='5v8t' size='340' side='right' caption='[[5v8t]], [[Resolution\|resolution]] 2.10Å' scene=''>
-	~~Authors: Lorimer, D.D., Dranow, D.M., Seufert, F., Abendroth, J., Holzgrabe, U.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5v8t]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V8T OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V8T FirstGlance]. <br>
-	~~Description:~~ Crystal structure of SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with SF354	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8ZV:2-{[3,5-bis(2-methoxyethoxy)benzene-1-carbonyl]amino}ethyl+(2S)-1-(benzylsulfonyl)piperidine-2-carboxylate'>8ZV</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptidylprolyl_isomerase Peptidylprolyl isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.2.1.8 5.2.1.8] </span></td></tr>
-	[[~~Category~~: ~~Dranow~~, D.M]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5v8t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v8t OCA], [http://pdbe.org/5v8t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v8t RCSB], [http://www.ebi.ac.uk/pdbsum/5v8t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v8t ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Lorimer~~, D.D]]	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/SMT3_YEAST SMT3_YEAST]] Not known; suppressor of MIF2 mutations.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Peptidylprolyl isomerase]]
	[[Category: Abendroth, J]]		[[Category: Abendroth, J]]
		+	[[Category: Dranow, D M]]
	[[Category: Holzgrabe, U]]		[[Category: Holzgrabe, U]]
		+	[[Category: Lorimer, D D]]
	[[Category: Seufert, F]]		[[Category: Seufert, F]]
		+	[[Category: Burkholderia]]
		+	[[Category: Isomerase]]
		+	[[Category: Peptidyl]]
		+	[[Category: Proline]]

OCA at 13:56, 27 September 2017

OCA — Wed, 27 Sep 2017 13:56:25 GMT

←Older revision		Revision as of 13:56, 27 September 2017
Line 3:		Line 3:
	The entry 5v8t is ON HOLD until Paper Publication		The entry 5v8t is ON HOLD until Paper Publication

-	Authors: Lorimer, D.D., Dranow, D.M, Seufert, F., Abendroth, J., Holzgrabe, U.	+	Authors: Lorimer, D.D., Dranow, D.M., Seufert, F., Abendroth, J., Holzgrabe, U.

	Description: Crystal structure of SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with SF354		Description: Crystal structure of SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with SF354
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	~~[[Category: Holzgrabe, U]]~~	+	[[Category: Dranow, D.M]]
-	[[Category: Dranow, D.M~~, Seufert, F~~]]	+
	[[Category: Lorimer, D.D]]		[[Category: Lorimer, D.D]]
	[[Category: Abendroth, J]]		[[Category: Abendroth, J]]
		+	[[Category: Holzgrabe, U]]
		+	[[Category: Seufert, F]]

OCA: Protected "5v8t" [edit=sysop:move=sysop]

OCA — Wed, 05 Apr 2017 11:45:23 GMT

Protected "5v8t" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:45, 5 April 2017

OCA: New page: '''Unreleased structure''' The entry 5v8t is ON HOLD until Paper Publication Authors: Lorimer, D.D., Dranow, D.M, Seufert, F., Abendroth, J., Holzgrabe, U. Description: Crystal structu...

OCA — Wed, 05 Apr 2017 11:45:22 GMT

New page: '''Unreleased structure''' The entry 5v8t is ON HOLD until Paper Publication Authors: Lorimer, D.D., Dranow, D.M, Seufert, F., Abendroth, J., Holzgrabe, U. Description: Crystal structu...

New page

'''Unreleased structure'''

The entry 5v8t is ON HOLD until Paper Publication

Authors: Lorimer, D.D., Dranow, D.M, Seufert, F., Abendroth, J., Holzgrabe, U.

Description: Crystal structure of SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with SF354
[[Category: Unreleased Structures]]
[[Category: Holzgrabe, U]]
[[Category: Dranow, D.M, Seufert, F]]
[[Category: Lorimer, D.D]]
[[Category: Abendroth, J]]