5vk4 - Revision history

OCA at 13:50, 4 October 2023

OCA — Wed, 04 Oct 2023 13:50:24 GMT

←Older revision		Revision as of 13:50, 4 October 2023
Line 3:		Line 3:
	<StructureSection load='5vk4' size='340' side='right'caption='[[5vk4]], [[Resolution\|resolution]] 2.65Å' scene=''>		<StructureSection load='5vk4' size='340' side='right'caption='[[5vk4]], [[Resolution\|resolution]] 2.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5vk4]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"diplococcus_gonorrhoeae"_(zopf_1885)_lehmann_and_neumann_1896 "diplococcus~~ gonorrhoeae~~" (zopf 1885) lehmann and neumann 1896~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VK4 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5VK4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5vk4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_gonorrhoeae Neisseria gonorrhoeae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VK4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VK4 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID~~-~~ADENYLATE+ESTER'>ANP</scene>~~, ~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.65Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>purM, WHOG_01214C, WHOG_02062, WHON_01216C, WHON_01605, WHOO_01146C, WHOO_02090 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~485~~ "~~Diplococcus gonorrhoeae~~" ~~(Zopf 1885) Lehmann and Neumann 1896])</td~~><~~/tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>[http://en.wikipedia.org/wiki/Phosphoribosylformylglycinamidine_cyclo-ligase Phosphoribosylformylglycinamidine cyclo-ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.3.1 6.3.3.1] </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vk4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vk4 OCA], [https://pdbe.org/5vk4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vk4 RCSB], [https://www.ebi.ac.uk/pdbsum/5vk4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vk4 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5vk4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vk4 OCA], [~~http~~://pdbe.org/5vk4 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5vk4 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5vk4 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5vk4 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/PUR5_NEIG1 PUR5_NEIG1]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Phosphoribosylformylglycinamidine cyclo-ligase]]~~	+	[[Category: Neisseria gonorrhoeae]]
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Atp-dependent]]~~	+
-	~~[[Category: Ligase]]~~	+
-	~~[[Category: Non-hydrolyzable substrate analog]]~~	+
-	~~[[Category: Purm]]~~	+
-	~~[[Category: Ssgcid~~]]	+

OCA at 08:38, 30 September 2020

OCA — Wed, 30 Sep 2020 08:38:31 GMT

←Older revision		Revision as of 08:38, 30 September 2020
Line 1:		Line 1:

	==Crystal structure of a phosphoribosylformylglycinamidine cyclo-ligase from Neisseria gonorrhoeae bound to AMPPNP and magnesium==		==Crystal structure of a phosphoribosylformylglycinamidine cyclo-ligase from Neisseria gonorrhoeae bound to AMPPNP and magnesium==
-	<StructureSection load='5vk4' size='340' side='right' caption='[[5vk4]], [[Resolution\|resolution]] 2.65Å' scene=''>	+	<StructureSection load='5vk4' size='340' side='right'caption='[[5vk4]], [[Resolution\|resolution]] 2.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5vk4]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VK4 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5VK4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5vk4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"diplococcus_gonorrhoeae"_(zopf_1885)_lehmann_and_neumann_1896 "diplococcus gonorrhoeae" (zopf 1885) lehmann and neumann 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VK4 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5VK4 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">purM, WHOG_01214C, WHOG_02062, WHON_01216C, WHON_01605, WHOO_01146C, WHOO_02090 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=485 "Diplococcus gonorrhoeae" (Zopf 1885) Lehmann and Neumann 1896])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoribosylformylglycinamidine_cyclo-ligase Phosphoribosylformylglycinamidine cyclo-ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.3.1 6.3.3.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoribosylformylglycinamidine_cyclo-ligase Phosphoribosylformylglycinamidine cyclo-ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.3.1 6.3.3.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5vk4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vk4 OCA], [http://pdbe.org/5vk4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vk4 RCSB], [http://www.ebi.ac.uk/pdbsum/5vk4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vk4 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5vk4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vk4 OCA], [http://pdbe.org/5vk4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vk4 RCSB], [http://www.ebi.ac.uk/pdbsum/5vk4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vk4 ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Phosphoribosylformylglycinamidine cyclo-ligase]]		[[Category: Phosphoribosylformylglycinamidine cyclo-ligase]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 13:02, 10 May 2017

OCA — Wed, 10 May 2017 13:02:54 GMT

←Older revision		Revision as of 13:02, 10 May 2017
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-	'''Unreleased structure'''

-	~~The entry 5vk4 is ON HOLD~~	+	==Crystal structure of a phosphoribosylformylglycinamidine cyclo-ligase from Neisseria gonorrhoeae bound to AMPPNP and magnesium==
-		+	<StructureSection load='5vk4' size='340' side='right' caption='[[5vk4]], [[Resolution\|resolution]] 2.65Å' scene=''>
-	~~Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5vk4]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VK4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VK4 FirstGlance]. <br>
-	~~Description:~~ Crystal structure of a phosphoribosylformylglycinamidine cyclo-ligase from Neisseria gonorrhoeae bound to AMPPNP and magnesium	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoribosylformylglycinamidine_cyclo-ligase Phosphoribosylformylglycinamidine cyclo-ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.3.1 6.3.3.1] </span></td></tr>
-	[[Category: ~~Seattle~~ Structural ~~Genomics Center For Infectious Disease (~~Ssgcid)]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vk4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vk4 OCA], [http://pdbe.org/5vk4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vk4 RCSB], [http://www.ebi.ac.uk/pdbsum/5vk4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vk4 ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Phosphoribosylformylglycinamidine cyclo-ligase]]
		+	[[Category: Structural genomic]]
		+	[[Category: Atp-dependent]]
		+	[[Category: Ligase]]
		+	[[Category: Non-hydrolyzable substrate analog]]
		+	[[Category: Purm]]
		+	[[Category: Ssgcid]]

OCA at 11:23, 4 May 2017

OCA — Thu, 04 May 2017 11:23:36 GMT

←Older revision		Revision as of 11:23, 4 May 2017
Line 3:		Line 3:
	The entry 5vk4 is ON HOLD		The entry 5vk4 is ON HOLD

-	Authors: Seattle Structural Genomics Center for Infectious Disease	+	Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)

	Description: Crystal structure of a phosphoribosylformylglycinamidine cyclo-ligase from Neisseria gonorrhoeae bound to AMPPNP and magnesium		Description: Crystal structure of a phosphoribosylformylglycinamidine cyclo-ligase from Neisseria gonorrhoeae bound to AMPPNP and magnesium
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Seattle Structural Genomics Center For Infectious Disease]]	+	[[Category: Seattle Structural Genomics Center For Infectious Disease (Ssgcid)]]

OCA: Protected "5vk4" [edit=sysop:move=sysop]

OCA — Thu, 27 Apr 2017 12:23:04 GMT

Protected "5vk4" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:23, 27 April 2017

OCA: New page: '''Unreleased structure''' The entry 5vk4 is ON HOLD Authors: Seattle Structural Genomics Center for Infectious Disease Description: Crystal structure of a phosphoribosylformylglycinam...

OCA — Thu, 27 Apr 2017 12:23:03 GMT

New page: '''Unreleased structure''' The entry 5vk4 is ON HOLD Authors: Seattle Structural Genomics Center for Infectious Disease Description: Crystal structure of a phosphoribosylformylglycinam...

New page

'''Unreleased structure'''

The entry 5vk4 is ON HOLD

Authors: Seattle Structural Genomics Center for Infectious Disease

Description: Crystal structure of a phosphoribosylformylglycinamidine cyclo-ligase from Neisseria gonorrhoeae bound to AMPPNP and magnesium
[[Category: Unreleased Structures]]
[[Category: Seattle Structural Genomics Center For Infectious Disease]]