5vqg - Revision history

OCA at 13:55, 4 October 2023

OCA — Wed, 04 Oct 2023 13:55:24 GMT

←Older revision		Revision as of 13:55, 4 October 2023
Line 3:		Line 3:
	<StructureSection load='5vqg' size='340' side='right'caption='[[5vqg]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='5vqg' size='340' side='right'caption='[[5vqg]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5vqg]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Bommo Bommo~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VQG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5VQG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5vqg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VQG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VQG FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~PAPI (~~[~~http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=7091 BOMMO])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.6Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5vqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vqg OCA], [~~http~~://pdbe.org/5vqg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5vqg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5vqg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5vqg ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vqg OCA], [https://pdbe.org/5vqg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vqg RCSB], [https://www.ebi.ac.uk/pdbsum/5vqg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vqg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/TDRKH_BOMMO TDRKH_BOMMO]] Participates in the primary piRNA biogenesis pathway and is required during spermatogenesis to repress transposable elements and prevent their mobilization, which is essential for the germline integrity (PubMed:23970546, PubMed:26919431). The piRNA metabolic process mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins (Siwi or Ago3) and govern the methylation and subsequent repression of transposons (PubMed:23970546, PubMed:26919431). Required for the final steps of primary piRNA biogenesis by participating in the processing of 31-37 nt intermediates into mature piRNAs: acts by recruiting the exonuclease PNLDC1/trimmer to Siwi-bound pre-piRNAs (PubMed:26919431).<ref>PMID:23970546</ref> <ref>PMID:26919431</ref>	+	[https://www.uniprot.org/uniprot/TDRKH_BOMMO TDRKH_BOMMO] Participates in the primary piRNA biogenesis pathway and is required during spermatogenesis to repress transposable elements and prevent their mobilization, which is essential for the germline integrity (PubMed:23970546, PubMed:26919431). The piRNA metabolic process mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins (Siwi or Ago3) and govern the methylation and subsequent repression of transposons (PubMed:23970546, PubMed:26919431). Required for the final steps of primary piRNA biogenesis by participating in the processing of 31-37 nt intermediates into mature piRNAs: acts by recruiting the exonuclease PNLDC1/trimmer to Siwi-bound pre-piRNAs (PubMed:26919431).<ref>PMID:23970546</ref> <ref>PMID:26919431</ref>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bommo~~]]	+	[[Category: Bombyx mori]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Honda, S]]	+	[[Category: Honda S]]
-	[[Category: Hubbard~~, P A~~]]	+	[[Category: Hubbard PA]]
-	[[Category: Kirino, Y]]	+	[[Category: Kirino Y]]
-	[[Category: McNally, R]]	+	[[Category: McNally R]]
-	[[Category: Murali, R]]	+	[[Category: Murali R]]
-	[[Category: Ohtaki, A]]	+	[[Category: Ohtaki A]]
-	[[Category: Pan, X]]	+	[[Category: Pan X]]
-	~~[[Category: Bmpapi]]~~	+
-	~~[[Category: Rna binding protein]]~~	+
-	~~[[Category: Sdma]]~~	+
-	~~[[Category: Tudor~~]]	+

OCA at 09:38, 1 January 2020

OCA — Wed, 01 Jan 2020 09:38:29 GMT

←Older revision		Revision as of 09:38, 1 January 2020
Line 1:		Line 1:

	==Crystal structure of the extended Tudor domain from BmPAPI==		==Crystal structure of the extended Tudor domain from BmPAPI==
-	<StructureSection load='5vqg' size='340' side='right' caption='[[5vqg]], [[Resolution\|resolution]] 2.60Å' scene=''>	+	<StructureSection load='5vqg' size='340' side='right'caption='[[5vqg]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5vqg]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VQG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5vqg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bommo Bommo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VQG FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vqg OCA], [http://pdbe.org/5vqg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vqg RCSB], [http://www.ebi.ac.uk/pdbsum/5vqg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vqg ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PAPI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7091 BOMMO])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vqg OCA], [http://pdbe.org/5vqg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vqg RCSB], [http://www.ebi.ac.uk/pdbsum/5vqg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vqg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bommo]]
		+	[[Category: Large Structures]]
	[[Category: Honda, S]]		[[Category: Honda, S]]
	[[Category: Hubbard, P A]]		[[Category: Hubbard, P A]]

OCA at 08:34, 6 October 2017

OCA — Fri, 06 Oct 2017 08:34:32 GMT

←Older revision		Revision as of 08:34, 6 October 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5vqg ~~is ON HOLD~~	+	==Crystal structure of the extended Tudor domain from BmPAPI==
-		+	<StructureSection load='5vqg' size='340' side='right' caption='[[5vqg]], [[Resolution\|resolution]] 2.60Å' scene=''>
-	~~Authors~~: ~~Hubbard~~, P.A., ~~Pan~~, X., ~~Ohtaki~~, A., ~~McNally~~, R., Honda, S., Kirino, Y~~., Murali, R.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5vqg]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VQG FirstGlance]. <br>
-	~~Description: Crystal structure of the extended Tudor domain from BmPAPI~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vqg OCA], [http://pdbe.org/5vqg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vqg RCSB], [http://www.ebi.ac.uk/pdbsum/5vqg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vqg ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/TDRKH_BOMMO TDRKH_BOMMO]] Participates in the primary piRNA biogenesis pathway and is required during spermatogenesis to repress transposable elements and prevent their mobilization, which is essential for the germline integrity (PubMed:23970546, PubMed:26919431). The piRNA metabolic process mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins (Siwi or Ago3) and govern the methylation and subsequent repression of transposons (PubMed:23970546, PubMed:26919431). Required for the final steps of primary piRNA biogenesis by participating in the processing of 31-37 nt intermediates into mature piRNAs: acts by recruiting the exonuclease PNLDC1/trimmer to Siwi-bound pre-piRNAs (PubMed:26919431).<ref>PMID:23970546</ref> <ref>PMID:26919431</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Honda, S]]
		+	[[Category: Hubbard, P A]]
		+	[[Category: Kirino, Y]]
		+	[[Category: McNally, R]]
	[[Category: Murali, R]]		[[Category: Murali, R]]
-	[[Category: ~~Hubbard~~, P.A]]	+	[[Category: Ohtaki, A]]
	[[Category: Pan, X]]		[[Category: Pan, X]]
-	[[Category: ~~Kirino, Y~~]]	+	[[Category: Bmpapi]]
-	[[Category: ~~Ohtaki, A~~]]	+	[[Category: Rna binding protein]]
-	[[Category: ~~Mcnally, R~~]]	+	[[Category: Sdma]]
-	[[Category: ~~Honda, S~~]]	+	[[Category: Tudor]]

OCA at 11:43, 24 May 2017

OCA — Wed, 24 May 2017 11:43:40 GMT

←Older revision		Revision as of 11:43, 24 May 2017
Line 3:		Line 3:
	The entry 5vqg is ON HOLD		The entry 5vqg is ON HOLD

-	Authors: ~~Paul~~ A. ~~Hubbard~~, ~~Xinlei~~ Pan, ~~Akashi~~ Ohtaki, ~~Randall~~ McNally, ~~Shozo~~ Honda, ~~Yohei~~ Kirino, ~~Ramachandran~~ Murali	+	Authors: Hubbard, P.A., Pan, X., Ohtaki, A., McNally, R., Honda, S., Kirino, Y., Murali, R.

	Description: Crystal structure of the extended Tudor domain from BmPAPI		Description: Crystal structure of the extended Tudor domain from BmPAPI
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: ~~Paul A.~~ Hubbard, ~~Xinlei~~ Pan, ~~Akashi~~ Ohtaki, ~~Randall~~ Mcnally, ~~Shozo~~ Honda, ~~Yohei Kirino, Ramachandran Murali~~]]	+	[[Category: Murali, R]]
		+	[[Category: Hubbard, P.A]]
		+	[[Category: Pan, X]]
		+	[[Category: Kirino, Y]]
		+	[[Category: Ohtaki, A]]
		+	[[Category: Mcnally, R]]
		+	[[Category: Honda, S]]

OCA: Protected "5vqg" [edit=sysop:move=sysop]

OCA — Wed, 17 May 2017 14:07:05 GMT

Protected "5vqg" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:07, 17 May 2017

OCA: New page: '''Unreleased structure''' The entry 5vqg is ON HOLD Authors: Paul A. Hubbard, Xinlei Pan, Akashi Ohtaki, Randall McNally, Shozo Honda, Yohei Kirino, Ramachandran Murali Description: C...

OCA — Wed, 17 May 2017 14:07:04 GMT

New page: '''Unreleased structure''' The entry 5vqg is ON HOLD Authors: Paul A. Hubbard, Xinlei Pan, Akashi Ohtaki, Randall McNally, Shozo Honda, Yohei Kirino, Ramachandran Murali Description: C...

New page

'''Unreleased structure'''

The entry 5vqg is ON HOLD

Authors: Paul A. Hubbard, Xinlei Pan, Akashi Ohtaki, Randall McNally, Shozo Honda, Yohei Kirino, Ramachandran Murali

Description: Crystal structure of the extended Tudor domain from BmPAPI
[[Category: Unreleased Structures]]
[[Category: Paul A. Hubbard, Xinlei Pan, Akashi Ohtaki, Randall Mcnally, Shozo Honda, Yohei Kirino, Ramachandran Murali]]