5wcv - Revision history

OCA at 10:29, 14 June 2023

OCA — Wed, 14 Jun 2023 10:29:28 GMT

←Older revision		Revision as of 10:29, 14 June 2023
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	==AsK132958: A minimal homologue of ShK identified in the transcriptome of Anemonia sulcata==		==AsK132958: A minimal homologue of ShK identified in the transcriptome of Anemonia sulcata==
-	<StructureSection load='5wcv' size='340' side='right'caption='[[5wcv~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='5wcv' size='340' side='right'caption='[[5wcv]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5wcv]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WCV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5WCV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5wcv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Anemonia_sulcata Anemonia sulcata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WCV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5WCV FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5wcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wcv OCA], [~~http~~://pdbe.org/5wcv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5wcv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5wcv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5wcv ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5wcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wcv OCA], [https://pdbe.org/5wcv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5wcv RCSB], [https://www.ebi.ac.uk/pdbsum/5wcv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5wcv ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A2H4A2Y1_ANESU A0A2H4A2Y1_ANESU]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Anemonia sulcata]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Krishnarjuna, B]]	+	[[Category: Krishnarjuna B]]
-	[[Category: MacRaild~~, C A~~]]	+	[[Category: MacRaild CA]]
-	[[Category: Norton~~, R S]]~~	+	[[Category: Norton RS]]
-	~~[[Category: Toxin]]~~	+
-	~~[[Category: Venom peptide~~]]	+

OCA at 08:51, 30 September 2020

OCA — Wed, 30 Sep 2020 08:51:29 GMT

←Older revision		Revision as of 08:51, 30 September 2020
Line 1:		Line 1:

	==AsK132958: A minimal homologue of ShK identified in the transcriptome of Anemonia sulcata==		==AsK132958: A minimal homologue of ShK identified in the transcriptome of Anemonia sulcata==
-	<StructureSection load='5wcv' size='340' side='right' caption='[[5wcv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='5wcv' size='340' side='right'caption='[[5wcv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5wcv]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WCV OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5WCV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5wcv]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WCV OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5WCV FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5wcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wcv OCA], [http://pdbe.org/5wcv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5wcv RCSB], [http://www.ebi.ac.uk/pdbsum/5wcv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5wcv ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5wcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wcv OCA], [http://pdbe.org/5wcv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5wcv RCSB], [http://www.ebi.ac.uk/pdbsum/5wcv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5wcv ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Krishnarjuna, B]]		[[Category: Krishnarjuna, B]]
	[[Category: MacRaild, C A]]		[[Category: MacRaild, C A]]

OCA at 07:01, 25 October 2017

OCA — Wed, 25 Oct 2017 07:01:08 GMT

←Older revision		Revision as of 07:01, 25 October 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5wcv is ~~ON HOLD until Paper~~ Publication	+	==AsK132958: A minimal homologue of ShK identified in the transcriptome of Anemonia sulcata==
		+	<StructureSection load='5wcv' size='340' side='right' caption='[[5wcv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5wcv]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WCV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5WCV FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5wcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wcv OCA], [http://pdbe.org/5wcv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5wcv RCSB], [http://www.ebi.ac.uk/pdbsum/5wcv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5wcv ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Peptide toxins elaborated by sea anemones target various ion-channel sub-types. Recent transcriptomic studies of sea anemones have identified several novel candidate peptides, some of which have cysteine frameworks identical to those of previously reported sequences. One such peptide is AsK132958, which was identified in a transcriptomic study of Anemonia sulcata and has a cysteine framework similar to that of ShK from Stichodactyla helianthus, but is six amino acid residues shorter. We have determined the solution structure of this novel peptide using NMR spectroscopy. The disulfide connectivities and structural scaffold of AsK132958 are very similar to those of ShK but the structure is more constrained. Toxicity assays were performed using grass shrimp (Palaemonetes sp) and Artemia nauplii, and patch-clamp electrophysiology assays were performed to assess the activity of AsK132958 against a range of voltage-gated potassium (KV) channels. AsK132958 showed no activity against grass shrimp, Artemia nauplii, or any of the KV channels tested, owing partly to the absence of a functional Lys-Tyr dyad. Three AsK132958 analogues, each containing a Tyr in the vicinity of Lys19, were therefore generated in an effort to restore binding, but none showed activity against any of KV channels tested. However, AsK132958 and its analogues are less susceptible to proteolysis than that of ShK. Our structure suggests that Lys19, which is expected to occupy the pore of the channel, is not sufficiently accessible for binding, and therefore that AsK132958 must have a distinct functional role that does not involve Kv channels.

-	~~Authors~~:	+	Structure, folding and stability of a minimal homologue from Anemonia sulcata of the sea anemone potassium channel blocker ShK.,Krishnarjuna B, MacRaild CA, Sunanda P, Morales RAV, Peigneur S, Macrander J, Yu HH, Daly M, Raghothama S, Dhawan V, Chauhan S, Tytgat J, Pennington MW, Norton RS Peptides. 2017 Oct 6. pii: S0196-9781(17)30305-4. doi:, 10.1016/j.peptides.2017.10.001. PMID:28993277<ref>PMID:28993277</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5wcv" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Krishnarjuna, B]]
		+	[[Category: MacRaild, C A]]
		+	[[Category: Norton, R S]]
		+	[[Category: Toxin]]
		+	[[Category: Venom peptide]]

OCA: Protected "5wcv" [edit=sysop:move=sysop]

OCA — Wed, 27 Sep 2017 14:41:38 GMT

Protected "5wcv" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:41, 27 September 2017

OCA: New page: '''Unreleased structure''' The entry 5wcv is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

OCA — Wed, 27 Sep 2017 14:41:37 GMT

New page: '''Unreleased structure''' The entry 5wcv is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5wcv is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]