5wrb - Revision history

OCA at 10:03, 6 September 2023

OCA — Wed, 06 Sep 2023 10:03:15 GMT

←Older revision		Revision as of 10:03, 6 September 2023
Line 3:		Line 3:
	<StructureSection load='5wrb' size='340' side='right'caption='[[5wrb]], [[Resolution\|resolution]] 2.01Å' scene=''>		<StructureSection load='5wrb' size='340' side='right'caption='[[5wrb]], [[Resolution\|resolution]] 2.01Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5wrb]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WRB OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5WRB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5wrb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WRB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5WRB FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>~~, ~~<scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.013Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~>[[5wra\|5wra]], [[5wr9\|5wr9]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	~~<tr~~ id~~='activity'><td class~~="~~sblockLbl~~"><~~b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5wrb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wrb OCA], [https://pdbe.org/5wrb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5wrb RCSB], [https://www.ebi.ac.uk/pdbsum/5wrb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5wrb ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5wrb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wrb OCA], [~~http~~://pdbe.org/5wrb PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5wrb RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5wrb PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5wrb ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>	+	[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 27:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Lysozyme]]~~	+	[[Category: Inoue S]]
-	[[Category: Inoue, S]]	+	[[Category: Masuda T]]
-	[[Category: Masuda, T]]	+	[[Category: Nango E]]
-	[[Category: Nango, E]]	+	[[Category: Sugahara M]]
-	[[Category: Sugahara, M]]	+	[[Category: Suzuki M]]
-	[[Category: Suzuki, M]]	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Sfx]]~~	+
-	~~[[Category: Xfel~~]]	+

OCA at 07:15, 7 October 2020

OCA — Wed, 07 Oct 2020 07:15:04 GMT

←Older revision		Revision as of 07:15, 7 October 2020
Line 1:		Line 1:

	==Crystal structure of hen egg-white lysozyme==		==Crystal structure of hen egg-white lysozyme==
-	<StructureSection load='5wrb' size='340' side='right' caption='[[5wrb]], [[Resolution\|resolution]] 2.01Å' scene=''>	+	<StructureSection load='5wrb' size='340' side='right'caption='[[5wrb]], [[Resolution\|resolution]] 2.01Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5wrb]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WRB OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5WRB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5wrb]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WRB OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5WRB FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5wra\|5wra]], [[5wr9\|5wr9]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5wra\|5wra]], [[5wr9\|5wr9]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5wrb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wrb OCA], [http://pdbe.org/5wrb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5wrb RCSB], [http://www.ebi.ac.uk/pdbsum/5wrb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5wrb ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5wrb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wrb OCA], [http://pdbe.org/5wrb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5wrb RCSB], [http://www.ebi.ac.uk/pdbsum/5wrb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5wrb ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 20:		Line 20:
	</div>		</div>
	<div class="pdbe-citations 5wrb" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5wrb" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Inoue, S]]		[[Category: Inoue, S]]

OCA at 06:19, 20 December 2017

OCA — Wed, 20 Dec 2017 06:19:06 GMT

←Older revision		Revision as of 06:19, 20 December 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5wrb is ~~ON HOLD~~ ~~until Paper~~ Publication	+	==Crystal structure of hen egg-white lysozyme==
		+	<StructureSection load='5wrb' size='340' side='right' caption='[[5wrb]], [[Resolution\|resolution]] 2.01Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5wrb]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WRB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5WRB FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5wra\|5wra]], [[5wr9\|5wr9]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5wrb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wrb OCA], [http://pdbe.org/5wrb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5wrb RCSB], [http://www.ebi.ac.uk/pdbsum/5wrb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5wrb ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Serial femtosecond crystallography (SFX) allows structures of proteins to be determined at room temperature with minimal radiation damage. A highly viscous matrix acts as a crystal carrier for serial sample loading at a low flow rate that enables the determination of the structure, while requiring consumption of less than 1 mg of the sample. However, a reliable and versatile carrier matrix for a wide variety of protein samples is still elusive. Here we introduce a hydroxyethyl cellulose-matrix carrier, to determine the structure of three proteins. The de novo structure determination of proteinase K from single-wavelength anomalous diffraction (SAD) by utilizing the anomalous signal of the praseodymium atom was demonstrated using 3,000 diffraction images.

-	~~Authors: Sugahara~~, M., ~~Suzuki~~, M., ~~Masuda~~, T., ~~Inoue~~, S., ~~Nango~~, E.	+	Hydroxyethyl cellulose matrix applied to serial crystallography.,Sugahara M, Nakane T, Masuda T, Suzuki M, Inoue S, Song C, Tanaka R, Nakatsu T, Mizohata E, Yumoto F, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Nureki O, Numata K, Nango E, Iwata S Sci Rep. 2017 Apr 6;7(1):703. doi: 10.1038/s41598-017-00761-0. PMID:28386083<ref>PMID:28386083</ref>

-	~~Description: Crystal structure~~ of ~~hen egg~~-~~white lysozyme~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5wrb" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Lysozyme]]
	[[Category: Inoue, S]]		[[Category: Inoue, S]]
-	[[Category: Suzuki, M]]
-	[[Category: Sugahara, M]]
-	[[Category: Nango, E]]
	[[Category: Masuda, T]]		[[Category: Masuda, T]]
		+	[[Category: Nango, E]]
		+	[[Category: Sugahara, M]]
		+	[[Category: Suzuki, M]]
		+	[[Category: Hydrolase]]
		+	[[Category: Sfx]]
		+	[[Category: Xfel]]

OCA at 15:05, 27 September 2017

OCA — Wed, 27 Sep 2017 15:05:30 GMT

←Older revision		Revision as of 15:05, 27 September 2017
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5wrb is ON HOLD	+	The entry 5wrb is ON HOLD until Paper Publication

	Authors: Sugahara, M., Suzuki, M., Masuda, T., Inoue, S., Nango, E.		Authors: Sugahara, M., Suzuki, M., Masuda, T., Inoue, S., Nango, E.
Line 8:		Line 8:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Inoue, S]]		[[Category: Inoue, S]]
-	[[Category: Nango, E]]
	[[Category: Suzuki, M]]		[[Category: Suzuki, M]]
-	[[Category: Masuda, T]]
	[[Category: Sugahara, M]]		[[Category: Sugahara, M]]
		+	[[Category: Nango, E]]
		+	[[Category: Masuda, T]]

OCA at 19:48, 15 March 2017

OCA — Wed, 15 Mar 2017 19:48:15 GMT

←Older revision		Revision as of 19:48, 15 March 2017
Line 8:		Line 8:
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Inoue, S]]		[[Category: Inoue, S]]
-	[[Category: Suzuki, M]]
-	[[Category: Sugahara, M]]
	[[Category: Nango, E]]		[[Category: Nango, E]]
		+	[[Category: Suzuki, M]]
	[[Category: Masuda, T]]		[[Category: Masuda, T]]
		+	[[Category: Sugahara, M]]

OCA: Protected "5wrb" [edit=sysop:move=sysop]

OCA — Fri, 09 Dec 2016 18:19:20 GMT

Protected "5wrb" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:19, 9 December 2016

OCA: New page: '''Unreleased structure''' The entry 5wrb is ON HOLD Authors: Sugahara, M., Suzuki, M., Masuda, T., Inoue, S., Nango, E. Description: Crystal structure of hen egg-white lysozyme [[Cate...

OCA — Fri, 09 Dec 2016 18:19:19 GMT

New page: '''Unreleased structure''' The entry 5wrb is ON HOLD Authors: Sugahara, M., Suzuki, M., Masuda, T., Inoue, S., Nango, E. Description: Crystal structure of hen egg-white lysozyme [[Cate...

New page

'''Unreleased structure'''

The entry 5wrb is ON HOLD

Authors: Sugahara, M., Suzuki, M., Masuda, T., Inoue, S., Nango, E.

Description: Crystal structure of hen egg-white lysozyme
[[Category: Unreleased Structures]]
[[Category: Inoue, S]]
[[Category: Suzuki, M]]
[[Category: Sugahara, M]]
[[Category: Nango, E]]
[[Category: Masuda, T]]