5wy6 - Revision history

OCA at 07:51, 22 November 2023

OCA — Wed, 22 Nov 2023 07:51:27 GMT

←Older revision		Revision as of 07:51, 22 November 2023
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	==Crystal structure of AtNUDX1 (E56A)==		==Crystal structure of AtNUDX1 (E56A)==
-	<StructureSection load='5wy6' size='340' side='right' caption='[[5wy6]], [[Resolution\|resolution]] 1.78Å' scene=''>	+	<StructureSection load='5wy6' size='340' side='right'caption='[[5wy6]], [[Resolution\|resolution]] 1.78Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5wy6]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Arath Arath~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WY6 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5WY6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5wy6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WY6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5WY6 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.779Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NUDT1, NUDX1, At1g68760, F14K14.13 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5wy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wy6 OCA], [~~http~~://pdbe.org/5wy6 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5wy6 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5wy6 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5wy6 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5wy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wy6 OCA], [https://pdbe.org/5wy6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5wy6 RCSB], [https://www.ebi.ac.uk/pdbsum/5wy6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5wy6 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/NUDT1_ARATH NUDT1_ARATH]] Mediates the hydrolysis of some nucleoside diphosphate derivatives. Its substrate specificity is unclear. In vitro, it can use NTP, dNTP, 8-oxo-GTP, 8-oxo-dGTP, dGTP, dATP, dTTP or dihydroneopterin triphosphate (DHNTP) as substrate. Has some NADH pyrophosphatase activity in vitro; however, such activity may not be relevant in vivo due to the high concentration of manganese used during the experiments. Plays an important role in protection against oxidative DNA and RNA damage by removing oxidatively damaged form of guanine.<ref>PMID:15611104</ref> <ref>PMID:15878881</ref> <ref>PMID:17804481</ref>	+	[https://www.uniprot.org/uniprot/NUDT1_ARATH NUDT1_ARATH] Mediates the hydrolysis of some nucleoside diphosphate derivatives. Its substrate specificity is unclear. In vitro, it can use NTP, dNTP, 8-oxo-GTP, 8-oxo-dGTP, dGTP, dATP, dTTP or dihydroneopterin triphosphate (DHNTP) as substrate. Has some NADH pyrophosphatase activity in vitro; however, such activity may not be relevant in vivo due to the high concentration of manganese used during the experiments. Plays an important role in protection against oxidative DNA and RNA damage by removing oxidatively damaged form of guanine.<ref>PMID:15611104</ref> <ref>PMID:15878881</ref> <ref>PMID:17804481</ref>
		+
		+	==See Also==
		+	*[[7%2C8-dihydro-8-oxoguanine triphosphatase 3D structures\|7%2C8-dihydro-8-oxoguanine triphosphatase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arath~~]]	+	[[Category: Arabidopsis thaliana]]
-	[[Category: Guan, Z]]	+	[[Category: Large Structures]]
-	[[Category: Liu, J]]	+	[[Category: Guan Z]]
-	[[Category: Yan, L]]	+	[[Category: Liu J]]
-	[[Category: Yin, P]]	+	[[Category: Yan L]]
-	[[Category: Zou, T]]	+	[[Category: Yin P]]
-	~~[[Category: Apo]]~~	+	[[Category: Zou T]]
-	~~[[Category: E56a mutant]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Nudx1~~]]	+

OCA at 08:19, 17 January 2018

OCA — Wed, 17 Jan 2018 08:19:36 GMT

←Older revision		Revision as of 08:19, 17 January 2018
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	<StructureSection load='5wy6' size='340' side='right' caption='[[5wy6]], [[Resolution\|resolution]] 1.78Å' scene=''>		<StructureSection load='5wy6' size='340' side='right' caption='[[5wy6]], [[Resolution\|resolution]] 1.78Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5wy6]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5WY6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5wy6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5WY6 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NUDT1, NUDX1, At1g68760, F14K14.13 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5wy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wy6 OCA], [http://pdbe.org/5wy6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5wy6 RCSB], [http://www.ebi.ac.uk/pdbsum/5wy6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5wy6 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5wy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wy6 OCA], [http://pdbe.org/5wy6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5wy6 RCSB], [http://www.ebi.ac.uk/pdbsum/5wy6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5wy6 ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Arath]]
	[[Category: Guan, Z]]		[[Category: Guan, Z]]
	[[Category: Liu, J]]		[[Category: Liu, J]]

OCA at 07:38, 15 November 2017

OCA — Wed, 15 Nov 2017 07:38:42 GMT

←Older revision		Revision as of 07:38, 15 November 2017
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-	'''Unreleased structure'''

-	~~The entry~~ 5wy6 is ~~ON HOLD~~ ~~until Paper Publication~~	+	==Crystal structure of AtNUDX1 (E56A)==
-		+	<StructureSection load='5wy6' size='340' side='right' caption='[[5wy6]], [[Resolution\|resolution]] 1.78Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5wy6]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5WY6 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5wy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wy6 OCA], [http://pdbe.org/5wy6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5wy6 RCSB], [http://www.ebi.ac.uk/pdbsum/5wy6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5wy6 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NUDT1_ARATH NUDT1_ARATH]] Mediates the hydrolysis of some nucleoside diphosphate derivatives. Its substrate specificity is unclear. In vitro, it can use NTP, dNTP, 8-oxo-GTP, 8-oxo-dGTP, dGTP, dATP, dTTP or dihydroneopterin triphosphate (DHNTP) as substrate. Has some NADH pyrophosphatase activity in vitro; however, such activity may not be relevant in vivo due to the high concentration of manganese used during the experiments. Plays an important role in protection against oxidative DNA and RNA damage by removing oxidatively damaged form of guanine.<ref>PMID:15611104</ref> <ref>PMID:15878881</ref> <ref>PMID:17804481</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Guan, Z]]
		+	[[Category: Liu, J]]
		+	[[Category: Yan, L]]
		+	[[Category: Yin, P]]
		+	[[Category: Zou, T]]
		+	[[Category: Apo]]
		+	[[Category: E56a mutant]]
		+	[[Category: Hydrolase]]
		+	[[Category: Nudx1]]

OCA at 12:06, 5 April 2017

OCA — Wed, 05 Apr 2017 12:06:03 GMT

←Older revision		Revision as of 12:06, 5 April 2017
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5wy6 is ON HOLD	+	The entry 5wy6 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5wy6" [edit=sysop:move=sysop]

OCA — Wed, 18 Jan 2017 15:20:49 GMT

Protected "5wy6" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:20, 18 January 2017

OCA: New page: '''Unreleased structure''' The entry 5wy6 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 18 Jan 2017 15:20:47 GMT

New page: '''Unreleased structure''' The entry 5wy6 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5wy6 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]