5x6z - Revision history

OCA at 07:54, 22 November 2023

OCA — Wed, 22 Nov 2023 07:54:56 GMT

←Older revision		Revision as of 07:54, 22 November 2023
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	<StructureSection load='5x6z' size='340' side='right'caption='[[5x6z]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='5x6z' size='340' side='right'caption='[[5x6z]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5x6z]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X6Z OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5X6Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5x6z]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rice_dwarf_virus_(isolate_O) Rice dwarf virus (isolate O)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X6Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5X6Z FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=GDP:GUANOSINE~~-~~5-DIPHOSPHATE'>GDP</scene>~~, ~~<scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~>[[5x6x\|5x6x]], [[5x6y\|5x6y]], [[5x70\|5x70]], [[5x71\|5x71]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene></td></tr>
-	~~<tr~~ id~~='activity'><td class~~="~~sblockLbl~~"><~~b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/mRNA_guanylyltransferase mRNA guanylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.50 2.7.7.50]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5x6z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x6z OCA], [https://pdbe.org/5x6z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5x6z RCSB], [https://www.ebi.ac.uk/pdbsum/5x6z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5x6z ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5x6z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x6z OCA], [~~http~~://pdbe.org/5x6z PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5x6z RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5x6z PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5x6z ProSAT]</span></td></tr>	+
	</table>		</table>
-		+	== Function ==
-	==~~See Also~~==	+	[https://www.uniprot.org/uniprot/MCE_RDVA MCE_RDVA] Enzyme involved in mRNA capping (Potential). Binds to GTP and might have guanylyltransferase activity. Together with the RNA-directed RNA polymerase P1 and protein P7, forms an transcriptional complex positioned near the channels situated at each of the five-fold vertices of the core (By similarity).
-	*[~~[MRNA~~ capping ~~enzyme\|MRNA capping enzyme]]~~	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: MRNA guanylyltransferase]]~~	+	[[Category: Higashiura A]]
-	[[Category: Higashiura, A]]	+	[[Category: Nakagawa A]]
-	[[Category: Nakagawa, A]]	+	[[Category: Nakamichi Y]]
-	[[Category: Nakamichi, Y]]	+
-	~~[[Category: Guanylyltransferase]]~~	+
-	~~[[Category: Methyltransferase]]~~	+
-	~~[[Category: Mrna 5'-capping enzyme]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 07:28, 7 October 2020

OCA — Wed, 07 Oct 2020 07:28:47 GMT

←Older revision		Revision as of 07:28, 7 October 2020
Line 1:		Line 1:

	==Crystal structure of Rice Dwarf Virus P5 in complex with GTP and GDP==		==Crystal structure of Rice Dwarf Virus P5 in complex with GTP and GDP==
-	<StructureSection load='5x6z' size='340' side='right' caption='[[5x6z]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='5x6z' size='340' side='right'caption='[[5x6z]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5x6z]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X6Z OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5X6Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5x6z]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X6Z OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5X6Z FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5x6x\|5x6x]], [[5x6y\|5x6y]], [[5x70\|5x70]], [[5x71\|5x71]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5x6x\|5x6x]], [[5x6y\|5x6y]], [[5x70\|5x70]], [[5x71\|5x71]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/mRNA_guanylyltransferase mRNA guanylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.50 2.7.7.50] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/mRNA_guanylyltransferase mRNA guanylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.50 2.7.7.50] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5x6z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x6z OCA], [http://pdbe.org/5x6z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x6z RCSB], [http://www.ebi.ac.uk/pdbsum/5x6z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x6z ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5x6z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x6z OCA], [http://pdbe.org/5x6z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x6z RCSB], [http://www.ebi.ac.uk/pdbsum/5x6z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x6z ProSAT]</span></td></tr>
	</table>		</table>
		+
		+	==See Also==
		+	*[[MRNA capping enzyme\|MRNA capping enzyme]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: MRNA guanylyltransferase]]		[[Category: MRNA guanylyltransferase]]
	[[Category: Higashiura, A]]		[[Category: Higashiura, A]]

OCA at 06:26, 28 February 2018

OCA — Wed, 28 Feb 2018 06:26:53 GMT

←Older revision		Revision as of 06:26, 28 February 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5x6z is ~~ON HOLD until Paper Publication~~	+	==Crystal structure of Rice Dwarf Virus P5 in complex with GTP and GDP==
-		+	<StructureSection load='5x6z' size='340' side='right' caption='[[5x6z]], [[Resolution\|resolution]] 2.10Å' scene=''>
-	~~Authors~~: ~~Nakamichi~~, Y., ~~Higashiura~~, A., ~~Nakagawa~~, A.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5x6z]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X6Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5X6Z FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure of Rice Dwarf Virus P5 in complex with GTP and GDP~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5x6x\|5x6x]], [[5x6y\|5x6y]], [[5x70\|5x70]], [[5x71\|5x71]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/mRNA_guanylyltransferase mRNA guanylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.50 2.7.7.50] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5x6z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x6z OCA], [http://pdbe.org/5x6z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x6z RCSB], [http://www.ebi.ac.uk/pdbsum/5x6z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x6z ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: MRNA guanylyltransferase]]
		+	[[Category: Higashiura, A]]
		+	[[Category: Nakagawa, A]]
	[[Category: Nakamichi, Y]]		[[Category: Nakamichi, Y]]
-	[[Category: ~~Nakagawa, A~~]]	+	[[Category: Guanylyltransferase]]
-	[[Category: ~~Higashiura, A~~]]	+	[[Category: Methyltransferase]]
		+	[[Category: Mrna 5'-capping enzyme]]
		+	[[Category: Transferase]]

OCA at 12:18, 5 April 2017

OCA — Wed, 05 Apr 2017 12:18:51 GMT

←Older revision		Revision as of 12:18, 5 April 2017
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5x6z is ON HOLD	+	The entry 5x6z is ON HOLD until Paper Publication

	Authors: Nakamichi, Y., Higashiura, A., Nakagawa, A.		Authors: Nakamichi, Y., Higashiura, A., Nakagawa, A.

OCA: Protected "5x6z" [edit=sysop:move=sysop]

OCA — Thu, 09 Mar 2017 15:50:09 GMT

Protected "5x6z" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:50, 9 March 2017

OCA: New page: '''Unreleased structure''' The entry 5x6z is ON HOLD Authors: Nakamichi, Y., Higashiura, A., Nakagawa, A. Description: Crystal structure of Rice Dwarf Virus P5 in complex with GTP and ...

OCA — Thu, 09 Mar 2017 15:50:08 GMT

New page: '''Unreleased structure''' The entry 5x6z is ON HOLD Authors: Nakamichi, Y., Higashiura, A., Nakagawa, A. Description: Crystal structure of Rice Dwarf Virus P5 in complex with GTP and ...

New page

'''Unreleased structure'''

The entry 5x6z is ON HOLD

Authors: Nakamichi, Y., Higashiura, A., Nakagawa, A.

Description: Crystal structure of Rice Dwarf Virus P5 in complex with GTP and GDP
[[Category: Unreleased Structures]]
[[Category: Nakamichi, Y]]
[[Category: Nakagawa, A]]
[[Category: Higashiura, A]]