5xh8 - Revision history

OCA at 08:02, 22 November 2023

OCA — Wed, 22 Nov 2023 08:02:07 GMT

←Older revision		Revision as of 08:02, 22 November 2023
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	<StructureSection load='5xh8' size='340' side='right'caption='[[5xh8]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='5xh8' size='340' side='right'caption='[[5xh8]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5xh8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XH8 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5XH8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5xh8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_luchuensis_IFO_4308 Aspergillus luchuensis IFO 4308]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XH8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XH8 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5xh9\|5xh9]], [[5xha\|5xha]]~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5xh8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xh8 OCA], [~~http~~://pdbe.org/5xh8 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5xh8 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5xh8 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5xh8 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xh8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xh8 OCA], [https://pdbe.org/5xh8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xh8 RCSB], [https://www.ebi.ac.uk/pdbsum/5xh8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xh8 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/G7XM46_ASPKW G7XM46_ASPKW]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Aspergillus luchuensis IFO 4308]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Nagaya, M]]	+	[[Category: Nagaya M]]
-	[[Category: Tonozuka, T]]	+	[[Category: Tonozuka T]]
-	~~[[Category: 1-kestose]]~~	+
-	~~[[Category: Beta-propeller]]~~	+
-	~~[[Category: Fructooligosaccharide]]~~	+
-	~~[[Category: Gh32]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 06:49, 14 October 2020

OCA — Wed, 14 Oct 2020 06:49:34 GMT

←Older revision		Revision as of 06:49, 14 October 2020
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	==Aspergillus kawachii beta-fructofuranosidase complexed with glycerol==		==Aspergillus kawachii beta-fructofuranosidase complexed with glycerol==
-	<StructureSection load='5xh8' size='340' side='right' caption='[[5xh8]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='5xh8' size='340' side='right'caption='[[5xh8]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5xh8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XH8 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5XH8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5xh8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XH8 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5XH8 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5xh9\|5xh9]], [[5xha\|5xha]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5xh9\|5xh9]], [[5xha\|5xha]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5xh8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xh8 OCA], [http://pdbe.org/5xh8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xh8 RCSB], [http://www.ebi.ac.uk/pdbsum/5xh8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xh8 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5xh8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xh8 OCA], [http://pdbe.org/5xh8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xh8 RCSB], [http://www.ebi.ac.uk/pdbsum/5xh8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xh8 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</div>		</div>
	<div class="pdbe-citations 5xh8" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5xh8" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Invertase\|Invertase]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Nagaya, M]]		[[Category: Nagaya, M]]
	[[Category: Tonozuka, T]]		[[Category: Tonozuka, T]]

OCA at 04:04, 4 August 2017

OCA — Fri, 04 Aug 2017 04:04:22 GMT

←Older revision		Revision as of 04:04, 4 August 2017
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-	'''Unreleased structure'''

-	~~The entry~~ 5xh8 is ~~ON HOLD until Paper~~ Publication	+	==Aspergillus kawachii beta-fructofuranosidase complexed with glycerol==
		+	<StructureSection load='5xh8' size='340' side='right' caption='[[5xh8]], [[Resolution\|resolution]] 2.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5xh8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XH8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XH8 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5xh9\|5xh9]], [[5xha\|5xha]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xh8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xh8 OCA], [http://pdbe.org/5xh8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xh8 RCSB], [http://www.ebi.ac.uk/pdbsum/5xh8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xh8 ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	beta-Fructofuranosidases belonging to glycoside hydrolase family (GH) 32 are enzymes that hydrolyze sucrose. Some GH32 enzymes also catalyze transfructosylation to produce fructooligosaccharides. We found that Aspergillus kawachii IFO 4308 beta-fructofuranosidase (AkFFase) produces fructooligosaccharides, mainly 1-kestose, from sucrose. We determined the crystal structure of AkFFase. AkFFase is composed of an N-terminal small component, a beta-propeller catalytic domain, an alpha-helical linker, and a C-terminal beta-sandwich, similar to other GH32 enzymes. AkFFase forms a dimer, and the dimerization pattern is different from those of other oligomeric GH32 enzymes. The complex structure of AkFFase with fructose unexpectedly showed that fructose binds both subsites -1 and +1, despite the fact that the catalytic residues were not mutated. Fructose at subsite +1 interacts with Ile146 and Glu296 of AkFFase via direct hydrogen bonds.

-	~~Authors~~:	+	Crystal structure of a beta-fructofuranosidase with high transfructosylation activity from Aspergillus kawachii.,Nagaya M, Kimura M, Gozu Y, Sato S, Hirano K, Tochio T, Nishikawa A, Tonozuka T Biosci Biotechnol Biochem. 2017 Jul 17:1-10. doi: 10.1080/09168451.2017.1353405. PMID:28715279<ref>PMID:28715279</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5xh8" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Nagaya, M]]
		+	[[Category: Tonozuka, T]]
		+	[[Category: 1-kestose]]
		+	[[Category: Beta-propeller]]
		+	[[Category: Fructooligosaccharide]]
		+	[[Category: Gh32]]
		+	[[Category: Hydrolase]]

OCA at 12:11, 4 May 2017

OCA — Thu, 04 May 2017 12:11:51 GMT

←Older revision		Revision as of 12:11, 4 May 2017
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5xh8 is ON HOLD	+	The entry 5xh8 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5xh8" [edit=sysop:move=sysop]

OCA — Thu, 27 Apr 2017 13:04:43 GMT

Protected "5xh8" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:04, 27 April 2017

OCA: New page: '''Unreleased structure''' The entry 5xh8 is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Thu, 27 Apr 2017 13:04:41 GMT

New page: '''Unreleased structure''' The entry 5xh8 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5xh8 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]